Variant report

Variant	rs9458004
Chromosome Location	chr6:161117450-161117451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:161117250-161117475	HepG2	liver:	n/a	n/a
2	FOSL2	chr6:161117362-161117845	HepG2	liver:	n/a	n/a
3	FOXA2	chr6:161117272-161117458	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000224477	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12523781	1.00[ASN][1000 genomes]
rs12525588	1.00[ASN][1000 genomes]
rs12526465	1.00[ASN][1000 genomes]
rs12529361	1.00[ASN][1000 genomes]
rs1358753	1.00[ASN][1000 genomes]
rs1358754	1.00[ASN][1000 genomes]
rs17557261	1.00[ASN][1000 genomes]
rs1998043	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998044	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998045	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115868	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41269844	1.00[ASN][1000 genomes]
rs41269878	1.00[ASN][1000 genomes]
rs4252051	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4252052	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4252053	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4348293	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5014650	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56090213	1.00[ASN][1000 genomes]
rs7758766	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759633	1.00[ASN][1000 genomes]
rs9456575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457991	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457992	0.86[EUR][1000 genomes]
rs9457993	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457997	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457998	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458002	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458009	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv605005	chr6:161069941-161152449	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161115600-161118200	Enhancers	Liver	Liver
2	chr6:161117200-161119600	Enhancers	HepG2	liver
3	chr6:161117200-161120200	Enhancers	Fetal Intestine Large	intestine

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