Variant report
| Variant | rs56090213 |
|---|---|
| Chromosome Location | chr6:161097218-161097219 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12523781 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12525588 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12526465 | 1.00[ASN][1000 genomes] |
| rs12529361 | 1.00[ASN][1000 genomes] |
| rs1358753 | 1.00[ASN][1000 genomes] |
| rs1358754 | 1.00[ASN][1000 genomes] |
| rs17557261 | 1.00[ASN][1000 genomes] |
| rs1998043 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1998044 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1998045 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2115868 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41269844 | 1.00[ASN][1000 genomes] |
| rs41269878 | 1.00[ASN][1000 genomes] |
| rs4252051 | 1.00[ASN][1000 genomes] |
| rs4252052 | 1.00[ASN][1000 genomes] |
| rs4252053 | 1.00[ASN][1000 genomes] |
| rs4348293 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5014650 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7758766 | 1.00[ASN][1000 genomes] |
| rs7759633 | 1.00[ASN][1000 genomes] |
| rs9456575 | 1.00[ASN][1000 genomes] |
| rs9457991 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9457993 | 1.00[ASN][1000 genomes] |
| rs9457997 | 1.00[ASN][1000 genomes] |
| rs9457998 | 1.00[ASN][1000 genomes] |
| rs9458002 | 1.00[ASN][1000 genomes] |
| rs9458003 | 1.00[ASN][1000 genomes] |
| rs9458004 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758089 | chr6:160372244-161234665 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | esv2759484 | chr6:160372244-161234665 | Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv605005 | chr6:161069941-161152449 | Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:161087600-161100200 | Weak transcription | Right Atrium | heart |
| 2 | chr6:161091000-161098200 | Weak transcription | Liver | Liver |
