Variant report

Variant	rs41269844
Chromosome Location	chr6:161085026-161085027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12523781	1.00[ASN][1000 genomes]
rs12525447	0.86[AFR][1000 genomes]
rs12525588	1.00[ASN][1000 genomes]
rs12526465	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529361	1.00[ASN][1000 genomes]
rs1358753	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358754	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17557261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998043	1.00[ASN][1000 genomes]
rs1998044	1.00[ASN][1000 genomes]
rs1998045	1.00[ASN][1000 genomes]
rs2115868	1.00[ASN][1000 genomes]
rs41269878	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272110	0.86[AFR][1000 genomes]
rs4252051	1.00[ASN][1000 genomes]
rs4252052	1.00[ASN][1000 genomes]
rs4252053	1.00[ASN][1000 genomes]
rs4348293	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5014650	1.00[ASN][1000 genomes]
rs56090213	1.00[ASN][1000 genomes]
rs7758766	1.00[ASN][1000 genomes]
rs7759633	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456575	1.00[ASN][1000 genomes]
rs9457991	1.00[ASN][1000 genomes]
rs9457993	1.00[ASN][1000 genomes]
rs9457997	1.00[ASN][1000 genomes]
rs9457998	1.00[ASN][1000 genomes]
rs9458002	1.00[ASN][1000 genomes]
rs9458003	1.00[ASN][1000 genomes]
rs9458004	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv604997	chr6:160957114-161088918	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv605005	chr6:161069941-161152449	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161084200-161086600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:161084200-161089800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:161085000-161085400	Active TSS	Liver	Liver

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