Variant report

Variant	rs12529361
Chromosome Location	chr6:161125631-161125632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr6:161125485-161126178	HepG2	liver:	n/a	n/a
2	FOXA1	chr6:161125529-161126116	HepG2	liver:	n/a	n/a
3	EP300	chr6:161125574-161125991	HepG2	liver:	n/a	chr6:161125981-161125988
4	TEAD4	chr6:161125451-161126165	HepG2	liver:	n/a	n/a
5	MYBL2	chr6:161125352-161126223	HepG2	liver:	n/a	n/a
6	POLR2A	chr6:161125504-161126341	HepG2	liver:	n/a	n/a
7	NFIC	chr6:161125562-161126068	HepG2	liver:	n/a	n/a
8	HNF4A	chr6:161125522-161126189	HepG2	liver:	n/a	chr6:161125773-161125788 chr6:161125774-161125786 chr6:161125772-161125787 chr6:161125773-161125788 chr6:161125771-161125789 chr6:161125773-161125788
9	FOSL2	chr6:161125504-161126160	HepG2	liver:	n/a	chr6:161125924-161125933
10	HEY1	chr6:161125171-161126637	HepG2	liver:	n/a	n/a
11	HEY1	chr6:161125574-161126237	HepG2	liver:	n/a	n/a
12	JUND	chr6:161125620-161126084	HepG2	liver:	n/a	chr6:161125924-161125933
13	RXRA	chr6:161125514-161126161	HepG2	liver:	n/a	n/a
14	NFIC	chr6:161125491-161126099	HepG2	liver:	n/a	n/a
15	HNF4G	chr6:161125576-161126058	HepG2	liver:	n/a	chr6:161125773-161125788 chr6:161125774-161125786 chr6:161125773-161125788 chr6:161125771-161125789 chr6:161125771-161125786 chr6:161125773-161125788
16	ZBTB33	chr6:161125564-161126032	HepG2	liver:	n/a	n/a
17	RXRA	chr6:161125571-161126152	HepG2	liver:	n/a	n/a
18	HDAC2	chr6:161125564-161126095	HepG2	liver:	n/a	n/a
19	HNF4A	chr6:161125609-161126096	HepG2	liver:	n/a	chr6:161125773-161125788 chr6:161125774-161125786 chr6:161125772-161125787 chr6:161125773-161125788 chr6:161125771-161125789 chr6:161125773-161125788
20	MBD4	chr6:161125543-161126142	HepG2	liver:	n/a	n/a
21	SP1	chr6:161125412-161126255	HepG2	liver:	n/a	chr6:161126119-161126128 chr6:161126119-161126129 chr6:161125790-161125804 chr6:161126119-161126129
22	POLR2A	chr6:161125572-161126327	HepG2	liver:	n/a	n/a
23	FOXA1	chr6:161125562-161126126	HepG2	liver:	n/a	n/a
24	REST	chr6:161125616-161126182	HepG2	liver:	n/a	chr6:161125856-161125874
25	HNF4G	chr6:161125503-161126161	HepG2	liver:	n/a	chr6:161125773-161125788 chr6:161125774-161125786 chr6:161125773-161125788 chr6:161125771-161125789 chr6:161125771-161125786 chr6:161125773-161125788
26	FOSL2	chr6:161125607-161126170	HepG2	liver:	n/a	chr6:161125924-161125933
27	FOXA1	chr6:161125559-161126151	HepG2	liver:	n/a	n/a
28	EP300	chr6:161125541-161126133	HepG2	liver:	n/a	chr6:161125981-161125988

Variant related genes	Relation type
PLG	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12523781	1.00[ASN][1000 genomes]
rs12525588	1.00[ASN][1000 genomes]
rs12526465	1.00[ASN][1000 genomes]
rs1358753	1.00[ASN][1000 genomes]
rs1358754	1.00[ASN][1000 genomes]
rs17557261	1.00[ASN][1000 genomes]
rs1998043	1.00[ASN][1000 genomes]
rs1998044	1.00[ASN][1000 genomes]
rs1998045	1.00[ASN][1000 genomes]
rs2115868	1.00[ASN][1000 genomes]
rs41269844	1.00[ASN][1000 genomes]
rs41269878	1.00[ASN][1000 genomes]
rs4252051	1.00[ASN][1000 genomes]
rs4252052	1.00[ASN][1000 genomes]
rs4252053	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4348293	1.00[ASN][1000 genomes]
rs5014650	1.00[ASN][1000 genomes]
rs56090213	1.00[ASN][1000 genomes]
rs7758766	1.00[ASN][1000 genomes]
rs7759633	1.00[ASN][1000 genomes]
rs9456575	1.00[ASN][1000 genomes]
rs9457991	1.00[ASN][1000 genomes]
rs9457993	1.00[ASN][1000 genomes]
rs9457997	1.00[ASN][1000 genomes]
rs9457998	1.00[ASN][1000 genomes]
rs9458002	1.00[ASN][1000 genomes]
rs9458003	1.00[ASN][1000 genomes]
rs9458004	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv605005	chr6:161069941-161152449	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv981222	chr6:161121517-161135479	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161123200-161127000	Active TSS	Liver	Liver
2	chr6:161123800-161126400	Enhancers	Fetal Intestine Small	intestine
3	chr6:161124800-161127600	Enhancers	Fetal Intestine Large	intestine
4	chr6:161125200-161128800	Enhancers	HepG2	liver

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