Variant report
| Variant | rs4252051 |
|---|---|
| Chromosome Location | chr6:161122216-161122217 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs12523781 | 1.00[ASN][1000 genomes] |
| rs12525588 | 1.00[ASN][1000 genomes] |
| rs12526465 | 1.00[ASN][1000 genomes] |
| rs12529361 | 1.00[ASN][1000 genomes] |
| rs1358753 | 1.00[ASN][1000 genomes] |
| rs1358754 | 1.00[ASN][1000 genomes] |
| rs17557261 | 1.00[ASN][1000 genomes] |
| rs1998043 | 1.00[ASN][1000 genomes] |
| rs1998044 | 1.00[ASN][1000 genomes] |
| rs1998045 | 1.00[ASN][1000 genomes] |
| rs2115868 | 1.00[ASN][1000 genomes] |
| rs41269844 | 1.00[ASN][1000 genomes] |
| rs41269878 | 1.00[ASN][1000 genomes] |
| rs4252052 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4252053 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4348293 | 1.00[ASN][1000 genomes] |
| rs5014650 | 1.00[ASN][1000 genomes] |
| rs56090213 | 1.00[ASN][1000 genomes] |
| rs7758766 | 1.00[ASN][1000 genomes] |
| rs7759633 | 1.00[ASN][1000 genomes] |
| rs9456575 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9457991 | 1.00[ASN][1000 genomes] |
| rs9457993 | 1.00[ASN][1000 genomes] |
| rs9457997 | 1.00[ASN][1000 genomes] |
| rs9457998 | 0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9458002 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9458003 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9458004 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9458009 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758089 | chr6:160372244-161234665 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | esv2759484 | chr6:160372244-161234665 | Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv605005 | chr6:161069941-161152449 | Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv981222 | chr6:161121517-161135479 | Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:161119600-161122600 | Weak transcription | HepG2 | liver |
| 2 | chr6:161120200-161122800 | Weak transcription | Fetal Intestine Large | intestine |
| 3 | chr6:161121000-161122800 | Enhancers | Liver | Liver |
