Variant report

Variant	rs9458140
Chromosome Location	chr6:161564389-161564390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161561291..161565490-chr6:161565996..161568943,5	K562	blood:
2	chr6:161561596..161565261-chr6:161565633..161567932,4	K562	blood:
3	chr6:161411883..161414805-chr6:161562442..161565257,3	K562	blood:
4	chr6:161563822..161565499-chr6:161639180..161641581,2	K562	blood:
5	chr6:161411612..161414805-chr6:161561243..161565000,4	K562	blood:
6	chr6:161562867..161565022-chr6:161622480..161624483,2	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11965825	1.00[ASN][1000 genomes]
rs11967514	1.00[ASN][1000 genomes]
rs12191615	1.00[ASN][1000 genomes]
rs12195072	1.00[ASN][1000 genomes]
rs16892225	1.00[ASN][1000 genomes]
rs1880367	0.81[EUR][1000 genomes]
rs4547987	1.00[ASN][1000 genomes]
rs4598047	1.00[ASN][1000 genomes]
rs4616970	1.00[ASN][1000 genomes]
rs4621614	1.00[ASN][1000 genomes]
rs66683315	1.00[ASN][1000 genomes]
rs6912308	1.00[ASN][1000 genomes]
rs73595029	1.00[ASN][1000 genomes]
rs7752907	0.80[EUR][1000 genomes]
rs7754215	0.81[EUR][1000 genomes]
rs9458141	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv527098	chr6:161559040-161565158	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161541000-161584600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:161542000-161567200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:161542000-161585600	Weak transcription	Fetal Kidney	kidney
4	chr6:161544600-161589600	Weak transcription	Fetal Brain Male	brain
5	chr6:161545000-161584800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:161548400-161590800	Weak transcription	Fetal Thymus	thymus
7	chr6:161549200-161565600	Strong transcription	Brain Germinal Matrix	brain
8	chr6:161549200-161577000	Strong transcription	Fetal Brain Female	brain
9	chr6:161549200-161577400	Strong transcription	Fetal Stomach	stomach
10	chr6:161549800-161589400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:161550000-161584600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:161550200-161577400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:161550400-161567000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:161553000-161564400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:161553200-161569600	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:161553400-161571800	Weak transcription	HUVEC	blood vessel
17	chr6:161553800-161586600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:161554000-161564600	Weak transcription	Liver	Liver
19	chr6:161554000-161574000	Weak transcription	Pancreas	Pancrea
20	chr6:161554000-161591000	Weak transcription	Colonic Mucosa	Colon
21	chr6:161555000-161585000	Weak transcription	Right Atrium	heart
22	chr6:161555200-161567000	Weak transcription	Fetal Lung	lung
23	chr6:161555600-161568800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:161555800-161586600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:161556200-161565200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:161556200-161566600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:161556600-161567800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:161557600-161567000	Weak transcription	Left Ventricle	heart
29	chr6:161557600-161569200	Weak transcription	Aorta	Aorta
30	chr6:161557600-161574400	Weak transcription	Gastric	stomach
31	chr6:161557600-161581400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:161557800-161584200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr6:161558000-161565000	Weak transcription	Adipose Nuclei	Adipose
34	chr6:161558200-161571400	Weak transcription	Thymus	Thymus
35	chr6:161558200-161571800	Weak transcription	Primary B cells from cord blood	blood
36	chr6:161558200-161577800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:161558200-161582600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:161558200-161589400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:161558400-161581400	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:161558600-161574400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:161559000-161566400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:161559400-161568200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:161559400-161587600	Weak transcription	Fetal Intestine Large	intestine
44	chr6:161560000-161583200	Weak transcription	HMEC	breast
45	chr6:161560200-161566200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr6:161560200-161566600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:161560200-161574800	Weak transcription	Right Ventricle	heart
48	chr6:161560200-161583800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:161560400-161564600	Weak transcription	Brain Anterior Caudate	brain
50	chr6:161560400-161566200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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