Variant report

Variant	rs1880367
Chromosome Location	chr6:161566405-161566406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161561596..161565261-chr6:161565633..161567932,4	K562	blood:
2	chr6:161548242..161551323-chr6:161565381..161568765,4	K562	blood:
3	chr6:161566087..161569641-chr6:161785856..161789665,3	K562	blood:
4	chr6:161561291..161565490-chr6:161565996..161568943,5	K562	blood:
5	chr6:161564867..161570084-chr6:161571350..161575451,5	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1001421	0.81[CEU][hapmap];0.85[ASN][1000 genomes]
rs1001422	1.00[CEU][hapmap]
rs10945718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11759408	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12110827	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1807426	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2009830	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2314190	0.83[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[ASN][1000 genomes]
rs3823057	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs41268545	0.80[ASN][1000 genomes]
rs55799452	0.80[ASN][1000 genomes]
rs6455707	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6912308	0.81[YRI][hapmap]
rs7752907	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754215	0.89[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7754525	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9458140	0.81[EUR][1000 genomes]
rs9458141	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3513382	chr6:161564862-161568560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3513383	chr6:161565312-161568410	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3513384	chr6:161565312-161568410	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3474357	chr6:161565896-161567492	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3474358	chr6:161565896-161567492	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv17820	chr6:161566070-161567418	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161541000-161584600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:161542000-161567200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:161542000-161585600	Weak transcription	Fetal Kidney	kidney
4	chr6:161544600-161589600	Weak transcription	Fetal Brain Male	brain
5	chr6:161545000-161584800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:161548400-161590800	Weak transcription	Fetal Thymus	thymus
7	chr6:161549200-161577000	Strong transcription	Fetal Brain Female	brain
8	chr6:161549200-161577400	Strong transcription	Fetal Stomach	stomach
9	chr6:161549800-161589400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:161550000-161584600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:161550200-161577400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:161550400-161567000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:161553200-161569600	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:161553400-161571800	Weak transcription	HUVEC	blood vessel
15	chr6:161553800-161586600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:161554000-161574000	Weak transcription	Pancreas	Pancrea
17	chr6:161554000-161591000	Weak transcription	Colonic Mucosa	Colon
18	chr6:161555000-161585000	Weak transcription	Right Atrium	heart
19	chr6:161555200-161567000	Weak transcription	Fetal Lung	lung
20	chr6:161555600-161568800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:161555800-161586600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:161556200-161566600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:161556600-161567800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:161557600-161567000	Weak transcription	Left Ventricle	heart
25	chr6:161557600-161569200	Weak transcription	Aorta	Aorta
26	chr6:161557600-161574400	Weak transcription	Gastric	stomach
27	chr6:161557600-161581400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:161557800-161584200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:161558200-161571400	Weak transcription	Thymus	Thymus
30	chr6:161558200-161571800	Weak transcription	Primary B cells from cord blood	blood
31	chr6:161558200-161577800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:161558200-161582600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:161558200-161589400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:161558400-161581400	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:161558600-161574400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:161559400-161568200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:161559400-161587600	Weak transcription	Fetal Intestine Large	intestine
38	chr6:161560000-161583200	Weak transcription	HMEC	breast
39	chr6:161560200-161566600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:161560200-161574800	Weak transcription	Right Ventricle	heart
41	chr6:161560200-161583800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:161560400-161567000	Weak transcription	Brain Angular Gyrus	brain
43	chr6:161560400-161567200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:161560400-161568800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:161560400-161568800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:161560400-161571800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:161560400-161581400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:161560400-161584600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:161560600-161566600	Weak transcription	Ovary	ovary
50	chr6:161560600-161567800	Weak transcription	Brain Substantia Nigra	brain

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