Variant report

Variant	rs41268545
Chromosome Location	chr6:161553911-161553912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161552329..161556769-chr6:161557901..161562142,6	K562	blood:
2	chr6:161535183..161536723-chr6:161552096..161554849,2	K562	blood:
3	chr6:161553291..161555137-chr6:161555182..161557649,2	K562	blood:
4	chr6:161547634..161549721-chr6:161550165..161554843,5	K562	blood:
5	chr6:161553132..161555472-chr6:161560642..161562345,2	K562	blood:
6	chr6:161552790..161554841-chr6:161572944..161575587,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1001421	0.83[ASN][1000 genomes]
rs1001756	0.87[AMR][1000 genomes]
rs10945718	0.89[ASN][1000 genomes]
rs11751634	0.87[AMR][1000 genomes]
rs11751688	0.87[AMR][1000 genomes]
rs11751843	0.87[AMR][1000 genomes]
rs11752188	0.87[AMR][1000 genomes]
rs11753446	0.87[AMR][1000 genomes]
rs11755042	0.87[AMR][1000 genomes]
rs11755244	0.87[AMR][1000 genomes]
rs11757223	0.87[AMR][1000 genomes]
rs11757309	0.82[AMR][1000 genomes]
rs11759000	0.94[AMR][1000 genomes]
rs11759408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110827	1.00[ASN][1000 genomes]
rs1464781	0.87[AMR][1000 genomes]
rs1807426	1.00[ASN][1000 genomes]
rs1880367	0.80[ASN][1000 genomes]
rs2009830	1.00[ASN][1000 genomes]
rs2314190	0.89[ASN][1000 genomes]
rs3778218	0.87[AMR][1000 genomes]
rs3778221	0.88[ASN][1000 genomes]
rs3798916	0.87[AMR][1000 genomes]
rs3823057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55799452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57922639	0.87[AMR][1000 genomes]
rs58040353	0.87[AMR][1000 genomes]
rs59129068	0.87[AMR][1000 genomes]
rs59318837	0.87[AMR][1000 genomes]
rs6455707	0.80[ASN][1000 genomes]
rs6922534	0.82[AMR][1000 genomes]
rs7752907	0.80[ASN][1000 genomes]
rs7754215	0.89[ASN][1000 genomes]
rs7754525	0.89[ASN][1000 genomes]
rs9456635	0.88[AMR][1000 genomes]
rs9456636	0.88[AMR][1000 genomes]
rs9458135	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161534600-161555800	Weak transcription	A549	lung
2	chr6:161534600-161559800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:161537600-161556800	Weak transcription	Gastric	stomach
4	chr6:161538200-161559600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:161538400-161557800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:161538400-161558400	Weak transcription	HMEC	breast
7	chr6:161538600-161554800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:161538600-161555600	Weak transcription	NHLF	lung
9	chr6:161538600-161559600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:161538800-161554400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:161539800-161556800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:161539800-161557200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:161541000-161584600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:161541400-161562200	Weak transcription	NHDF-Ad	bronchial
15	chr6:161542000-161567200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:161542000-161585600	Weak transcription	Fetal Kidney	kidney
17	chr6:161543800-161554400	Weak transcription	Fetal Heart	heart
18	chr6:161544600-161555800	Weak transcription	Brain Angular Gyrus	brain
19	chr6:161544600-161589600	Weak transcription	Fetal Brain Male	brain
20	chr6:161545000-161555400	Weak transcription	Psoas Muscle	Psoas
21	chr6:161545000-161555600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:161545000-161584800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:161546200-161560800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:161546600-161555200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:161547400-161554000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:161547600-161555600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:161548000-161556200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:161548000-161557400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:161548200-161556800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:161548200-161562000	Strong transcription	Fetal Intestine Small	intestine
31	chr6:161548200-161562800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:161548400-161554600	Weak transcription	Right Atrium	heart
33	chr6:161548400-161556400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:161548400-161556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:161548400-161561200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:161548400-161590800	Weak transcription	Fetal Thymus	thymus
37	chr6:161548600-161557400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:161548800-161554600	Strong transcription	Fetal Muscle Leg	muscle
39	chr6:161549200-161555400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:161549200-161565600	Strong transcription	Brain Germinal Matrix	brain
41	chr6:161549200-161577000	Strong transcription	Fetal Brain Female	brain
42	chr6:161549200-161577400	Strong transcription	Fetal Stomach	stomach
43	chr6:161549400-161554000	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:161549600-161561200	Weak transcription	NH-A	brain
45	chr6:161549800-161589400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:161550000-161554800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:161550000-161556600	Weak transcription	GM12878-XiMat	blood
48	chr6:161550000-161584600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr6:161550200-161554600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:161550200-161556800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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