Variant report

Variant	rs59129068
Chromosome Location	chr6:161485943-161485944
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161485567..161487564-chr6:161487928..161489693,2	K562	blood:
2	chr6:161473331..161474860-chr6:161484363..161486590,2	K562	blood:
3	chr6:161483885..161486515-chr6:161491097..161493545,2	K562	blood:
4	chr6:161462456..161464087-chr6:161485751..161487381,2	K562	blood:
5	chr6:161414058..161416452-chr6:161484999..161486533,2	K562	blood:
6	chr6:161484345..161486496-chr6:161504631..161506495,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1001756	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751634	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11751688	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11751843	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752188	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11753446	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11755042	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11755244	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11757223	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11757309	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757882	0.83[AMR][1000 genomes]
rs11758794	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759000	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759408	0.87[AMR][1000 genomes]
rs11962121	0.95[EUR][1000 genomes]
rs1464781	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562025	0.95[EUR][1000 genomes]
rs2314377	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778218	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798916	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41268545	0.87[AMR][1000 genomes]
rs55799452	0.87[AMR][1000 genomes]
rs57922639	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58040353	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59318837	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907956	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922534	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940321	1.00[ASN][1000 genomes]
rs719474	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738423	0.85[EUR][1000 genomes]
rs9456635	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456636	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458121	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458135	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161435000-161490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:161449000-161494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:161452800-161489400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
5	chr6:161455200-161495800	Weak transcription	Fetal Brain Male	brain
6	chr6:161456400-161501600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:161459400-161488800	Weak transcription	Brain Angular Gyrus	brain
8	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
9	chr6:161459800-161496600	Weak transcription	Fetal Kidney	kidney
10	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
11	chr6:161460000-161499200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:161460400-161487200	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:161460400-161488800	Weak transcription	Fetal Heart	heart
14	chr6:161460600-161495600	Weak transcription	HSMMtube	muscle
15	chr6:161462800-161497200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:161462800-161497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:161462800-161508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:161463000-161489000	Weak transcription	Fetal Brain Female	brain
19	chr6:161463000-161491600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:161463200-161488000	Weak transcription	Ovary	ovary
21	chr6:161463400-161491600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:161463600-161495600	Weak transcription	Pancreas	Pancrea
23	chr6:161463800-161499200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:161470400-161495000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:161470600-161488800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:161470600-161492000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:161470600-161493800	Weak transcription	Fetal Thymus	thymus
28	chr6:161470600-161508000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:161470800-161491600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:161470800-161491600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:161471000-161487200	Weak transcription	NHDF-Ad	bronchial
32	chr6:161471000-161490400	Weak transcription	Lung	lung
33	chr6:161471000-161491600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:161471000-161503800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:161471200-161489000	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:161471200-161491600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:161471200-161492200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:161471200-161494400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:161471400-161491800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:161471400-161500600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:161471600-161491600	Weak transcription	Fetal Lung	lung
42	chr6:161471600-161494400	Weak transcription	Osteobl	bone
43	chr6:161471800-161491600	Weak transcription	Liver	Liver
44	chr6:161472000-161491600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:161472000-161491600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:161472000-161492200	Weak transcription	Fetal Intestine Large	intestine
47	chr6:161472200-161491600	Weak transcription	HSMM	muscle
48	chr6:161472600-161492600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:161472800-161491600	Weak transcription	Placenta	Placenta
50	chr6:161473000-161491600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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