Variant report

Variant	rs11759000
Chromosome Location	chr6:161549048-161549049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161548242..161551323-chr6:161565381..161568765,4	K562	blood:
2	chr6:161548339..161550868-chr6:161560378..161562313,2	K562	blood:
3	chr6:161547634..161549721-chr6:161550165..161554843,5	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1001421	1.00[CHB][hapmap]
rs1001422	1.00[CHB][hapmap]
rs1001756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11751688	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11753446	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11755042	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11755244	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11757223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11757309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757882	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11758794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759408	1.00[CHB][hapmap];0.94[AMR][1000 genomes]
rs11962121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12110827	1.00[CHB][hapmap]
rs1404269	1.00[CHB][hapmap]
rs1464781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534020	1.00[CHB][hapmap]
rs1562025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1807426	1.00[CHB][hapmap]
rs2009830	1.00[CHB][hapmap]
rs2314190	1.00[CHB][hapmap]
rs2314376	1.00[CHB][hapmap]
rs2314377	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778225	1.00[CHB][hapmap]
rs3798916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823057	1.00[CHB][hapmap]
rs41268545	0.94[AMR][1000 genomes]
rs55799452	0.94[AMR][1000 genomes]
rs57922639	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58040353	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59129068	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59318837	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905734	1.00[CHB][hapmap]
rs6907956	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922534	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940321	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs719474	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738423	0.90[EUR][1000 genomes]
rs7754215	1.00[CHB][hapmap]
rs9365245	1.00[CHB][hapmap]
rs9456635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456636	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458141	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161534000-161549800	Weak transcription	Stomach Mucosa	stomach
2	chr6:161534600-161555800	Weak transcription	A549	lung
3	chr6:161534600-161559800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:161537600-161556800	Weak transcription	Gastric	stomach
5	chr6:161538200-161549400	Weak transcription	NHEK	skin
6	chr6:161538200-161559600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:161538400-161549400	Weak transcription	HSMMtube	muscle
8	chr6:161538400-161553000	Weak transcription	Spleen	Spleen
9	chr6:161538400-161557800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:161538400-161558400	Weak transcription	HMEC	breast
11	chr6:161538600-161552600	Weak transcription	Pancreas	Pancrea
12	chr6:161538600-161554800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:161538600-161555600	Weak transcription	NHLF	lung
14	chr6:161538600-161559600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:161538800-161549400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:161538800-161553000	Weak transcription	Colonic Mucosa	Colon
17	chr6:161538800-161554400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:161539600-161550800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:161539800-161556800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:161539800-161557200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:161540600-161552800	Weak transcription	HUVEC	blood vessel
22	chr6:161541000-161584600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:161541400-161562200	Weak transcription	NHDF-Ad	bronchial
24	chr6:161541600-161549400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:161541800-161549400	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:161542000-161549600	Weak transcription	HSMM	muscle
27	chr6:161542000-161567200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:161542000-161585600	Weak transcription	Fetal Kidney	kidney
29	chr6:161543000-161549400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:161543800-161552200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
31	chr6:161543800-161554400	Weak transcription	Fetal Heart	heart
32	chr6:161544400-161549400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:161544600-161549200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:161544600-161555800	Weak transcription	Brain Angular Gyrus	brain
35	chr6:161544600-161589600	Weak transcription	Fetal Brain Male	brain
36	chr6:161544800-161549400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:161544800-161553400	Weak transcription	Liver	Liver
38	chr6:161545000-161549200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr6:161545000-161549200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:161545000-161549400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:161545000-161550000	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:161545000-161555400	Weak transcription	Psoas Muscle	Psoas
43	chr6:161545000-161555600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:161545000-161584800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:161545800-161551600	Weak transcription	HepG2	liver
46	chr6:161546200-161550000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:161546200-161550200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:161546200-161550400	Strong transcription	Primary hematopoietic stem cells	blood
49	chr6:161546200-161560800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:161546400-161549400	Weak transcription	Brain Anterior Caudate	brain

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