Variant report

Variant	rs11751688
Chromosome Location	chr6:161457064-161457065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161456051..161458146-chr6:161459168..161461301,4	K562	blood:
2	chr6:161444702..161446686-chr6:161456421..161458511,2	K562	blood:
3	chr6:161411970..161414469-chr6:161455651..161458332,2	K562	blood:
4	chr6:161412849..161414469-chr6:161455651..161457671,2	K562	blood:
5	chr6:161434049..161436665-chr6:161455755..161458419,2	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1001756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11752188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11757223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757309	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11757882	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11758794	0.97[EUR][1000 genomes]
rs11759000	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11759408	0.87[AMR][1000 genomes]
rs11962121	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1562025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2314377	0.86[EUR][1000 genomes]
rs35142900	1.00[ASN][1000 genomes]
rs3778218	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3798916	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41268545	0.87[AMR][1000 genomes]
rs55799452	0.87[AMR][1000 genomes]
rs57922639	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58040353	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59129068	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59318837	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60649875	1.00[ASN][1000 genomes]
rs6907956	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6922534	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs719474	0.97[EUR][1000 genomes]
rs7738423	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456635	0.86[EUR][1000 genomes]
rs9456636	0.86[EUR][1000 genomes]
rs9458121	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9458135	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161414200-161458200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:161414400-161469600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:161414600-161457400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:161416600-161475200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:161433000-161458000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:161433200-161459200	Weak transcription	Fetal Stomach	stomach
7	chr6:161433400-161459000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:161433600-161458200	Weak transcription	Fetal Brain Female	brain
9	chr6:161433600-161459600	Weak transcription	Brain Germinal Matrix	brain
10	chr6:161434000-161459000	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:161434800-161458200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:161435000-161458000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:161435000-161458800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:161435000-161490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:161437400-161457600	Weak transcription	Liver	Liver
16	chr6:161439200-161458800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:161440200-161459200	Weak transcription	Placenta	Placenta
18	chr6:161440600-161459600	Weak transcription	Esophagus	oesophagus
19	chr6:161441200-161459800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:161442600-161459200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:161442800-161459600	Weak transcription	Fetal Intestine Small	intestine
22	chr6:161442800-161463400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:161443800-161457800	Weak transcription	Primary B cells from cord blood	blood
24	chr6:161443800-161458000	Weak transcription	HepG2	liver
25	chr6:161443800-161459000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:161443800-161459000	Weak transcription	Right Ventricle	heart
27	chr6:161443800-161462000	Weak transcription	Spleen	Spleen
28	chr6:161443800-161465600	Weak transcription	Right Atrium	heart
29	chr6:161443800-161478600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:161446200-161459000	Weak transcription	Fetal Heart	heart
31	chr6:161447800-161458800	Weak transcription	Hela-S3	cervix
32	chr6:161448800-161472400	Weak transcription	A549	lung
33	chr6:161449000-161494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr6:161449200-161458800	Weak transcription	Psoas Muscle	Psoas
35	chr6:161449200-161459200	Weak transcription	Left Ventricle	heart
36	chr6:161449200-161459600	Weak transcription	Lung	lung
37	chr6:161449200-161459800	Weak transcription	Pancreas	Pancrea
38	chr6:161449200-161461600	Weak transcription	Gastric	stomach
39	chr6:161450400-161459000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:161450600-161459000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:161450600-161462000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:161450800-161461600	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr6:161451400-161459200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:161451400-161462000	Weak transcription	Aorta	Aorta
45	chr6:161451400-161462000	Weak transcription	Stomach Mucosa	stomach
46	chr6:161451800-161458800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr6:161451800-161459800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:161452400-161459200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:161452800-161458800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:161452800-161489400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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