Variant report

Variant	rs7738423
Chromosome Location	chr6:161429645-161429646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1001421	1.00[CHB][hapmap]
rs1001422	1.00[CHB][hapmap]
rs1001756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs11751634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751688	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs11752188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753446	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755042	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755244	0.90[EUR][1000 genomes]
rs11757223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs11757882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11759000	0.90[EUR][1000 genomes]
rs11759408	1.00[CHB][hapmap]
rs11962121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110827	1.00[CHB][hapmap]
rs1404269	1.00[CHB][hapmap]
rs1464781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1534020	1.00[CHB][hapmap]
rs1562025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807426	1.00[CHB][hapmap]
rs2009830	1.00[CHB][hapmap]
rs2314190	1.00[CHB][hapmap]
rs2314376	1.00[CHB][hapmap]
rs2314377	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35142900	1.00[ASN][1000 genomes]
rs3778218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs3778225	1.00[CHB][hapmap]
rs3798916	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3823057	1.00[CHB][hapmap]
rs4709491	0.86[YRI][hapmap]
rs57922639	0.87[EUR][1000 genomes]
rs58040353	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59129068	0.85[EUR][1000 genomes]
rs59318837	0.87[EUR][1000 genomes]
rs594555	1.00[CEU][hapmap]
rs594602	0.86[YRI][hapmap]
rs60649875	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905734	1.00[CHB][hapmap]
rs6905942	0.87[YRI][hapmap]
rs6940321	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs719474	0.87[EUR][1000 genomes]
rs7754215	1.00[CHB][hapmap]
rs9364586	0.86[YRI][hapmap]
rs9365245	1.00[CHB][hapmap]
rs9456635	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9458074	0.87[YRI][hapmap]
rs9458121	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9458135	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9458141	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161413800-161432000	Weak transcription	Aorta	Aorta
2	chr6:161413800-161433000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:161414000-161430800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:161414000-161432000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:161414200-161431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:161414200-161431600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:161414200-161458200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:161414400-161469600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:161414600-161432800	Weak transcription	Fetal Stomach	stomach
10	chr6:161414600-161442600	Weak transcription	Primary B cells from cord blood	blood
11	chr6:161414600-161457400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:161415600-161450000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:161416600-161475200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:161416800-161436200	Weak transcription	Fetal Intestine Small	intestine
15	chr6:161417400-161449000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:161417600-161430200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:161417800-161433600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:161418000-161432000	Weak transcription	Small Intestine	intestine
19	chr6:161418000-161432800	Weak transcription	Esophagus	oesophagus
20	chr6:161418000-161432800	Weak transcription	Right Atrium	heart
21	chr6:161418000-161434800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:161418000-161448800	Weak transcription	Lung	lung
23	chr6:161418400-161430800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:161418800-161432400	Weak transcription	Ovary	ovary
25	chr6:161420000-161434800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:161420800-161431800	Weak transcription	Fetal Lung	lung
27	chr6:161422800-161431200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:161422800-161431200	Weak transcription	HMEC	breast
29	chr6:161422800-161432000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:161422800-161433600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:161422800-161434600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:161422800-161441000	Weak transcription	K562	blood
33	chr6:161423000-161431200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:161423000-161431200	Weak transcription	HSMM	muscle
35	chr6:161423000-161431800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:161423000-161431800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:161423000-161431800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:161423000-161431800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:161423000-161443000	Weak transcription	HepG2	liver
40	chr6:161423200-161430600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:161423200-161433600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:161423200-161436200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:161423400-161432000	Weak transcription	Fetal Heart	heart
44	chr6:161424600-161431800	Weak transcription	NHLF	lung
45	chr6:161424800-161431000	Weak transcription	NHEK	skin
46	chr6:161424800-161431200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:161424800-161431200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:161424800-161431600	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:161424800-161431800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:161424800-161431800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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