Variant report

Variant	rs9458721
Chromosome Location	chr6:163510116-163510117
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163509761..163512247-chr6:163514199..163516689,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10214583	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961432	1.00[EUR][1000 genomes]
rs11966615	1.00[EUR][1000 genomes]
rs1408005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59793419	1.00[EUR][1000 genomes]
rs73786122	1.00[EUR][1000 genomes]
rs73786125	1.00[EUR][1000 genomes]
rs73786126	1.00[EUR][1000 genomes]
rs73786127	1.00[EUR][1000 genomes]
rs73786128	1.00[EUR][1000 genomes]
rs73786130	1.00[EUR][1000 genomes]
rs73786131	1.00[EUR][1000 genomes]
rs73786132	1.00[EUR][1000 genomes]
rs7742100	1.00[AMR][1000 genomes]
rs7766922	1.00[AMR][1000 genomes]
rs925659	1.00[EUR][1000 genomes]
rs9456836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458683	1.00[AMR][1000 genomes]
rs9458720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529089	chr6:163129464-163516451	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1030116	chr6:163273707-163525678	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020900	chr6:163302262-163517812	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv886917	chr6:163507051-163573962	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163505200-163514200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:163507200-163519400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:163507400-163514600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:163507400-163514800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:163507400-163515000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:163508800-163520800	Weak transcription	Pancreas	Pancrea
7	chr6:163509200-163510200	Active TSS	Right Ventricle	heart
8	chr6:163509600-163510400	Active TSS	Left Ventricle	heart
9	chr6:163510000-163510200	Active TSS	Fetal Heart	heart
10	chr6:163510000-163510400	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links