Variant report

Variant	rs9458722
Chromosome Location	chr6:163516639-163516640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163509761..163512247-chr6:163514199..163516689,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10214583	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11961432	1.00[EUR][1000 genomes]
rs11966615	1.00[EUR][1000 genomes]
rs1408005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59793419	1.00[EUR][1000 genomes]
rs73786125	1.00[EUR][1000 genomes]
rs73786126	1.00[EUR][1000 genomes]
rs73786127	1.00[EUR][1000 genomes]
rs73786128	1.00[EUR][1000 genomes]
rs73786130	1.00[EUR][1000 genomes]
rs73786131	1.00[EUR][1000 genomes]
rs73786132	1.00[EUR][1000 genomes]
rs7742100	1.00[AMR][1000 genomes]
rs7766922	1.00[AMR][1000 genomes]
rs925659	1.00[EUR][1000 genomes]
rs9456836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458683	1.00[AMR][1000 genomes]
rs9458720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1030116	chr6:163273707-163525678	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1020900	chr6:163302262-163517812	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv886917	chr6:163507051-163573962	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163507200-163519400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:163508800-163520800	Weak transcription	Pancreas	Pancrea
3	chr6:163510200-163519200	Weak transcription	Right Ventricle	heart
4	chr6:163510400-163519400	Weak transcription	Left Ventricle	heart
5	chr6:163512000-163519400	Weak transcription	Fetal Heart	heart
6	chr6:163513000-163516800	Enhancers	Brain Germinal Matrix	brain
7	chr6:163513800-163519200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:163514400-163519200	Weak transcription	Brain Substantia Nigra	brain
9	chr6:163514400-163519400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:163514400-163519600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:163514600-163519200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:163514600-163519400	Weak transcription	Brain Anterior Caudate	brain
13	chr6:163514800-163519400	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:163515000-163520000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:163515200-163520000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:163515600-163520200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:163515800-163519200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:163515800-163519200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:163516200-163517200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:163516400-163520000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:163516400-163520200	Weak transcription	Fetal Brain Male	brain

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