Variant report

Variant	rs9458778
Chromosome Location	chr6:163711355-163711356
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7764754	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163701800-163731200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163706200-163711800	Weak transcription	HUVEC	blood vessel
3	chr6:163706800-163714200	Weak transcription	HSMMtube	muscle
4	chr6:163707000-163714200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:163707000-163718200	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:163707800-163714000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:163709000-163714200	Weak transcription	Brain Substantia Nigra	brain
8	chr6:163709200-163711400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:163710000-163711400	Enhancers	Psoas Muscle	Psoas
10	chr6:163710200-163713000	Enhancers	Fetal Muscle Trunk	muscle
11	chr6:163710200-163714000	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:163710400-163713600	Enhancers	Fetal Heart	heart
13	chr6:163710400-163714200	Weak transcription	Brain Anterior Caudate	brain
14	chr6:163710800-163711400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:163711200-163712000	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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