Variant report

Variant	rs9458811
Chromosome Location	chr6:163768573-163768574
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163766963..163769650-chr6:163833960..163836613,2	MCF-7	breast:
2	chr6:163757980..163760301-chr6:163766336..163768728,2	K562	blood:
3	chr6:163760779..163762699-chr6:163768493..163770120,2	K562	blood:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction
ENSG00000270419	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12526757	0.85[ASN][1000 genomes]
rs73603795	0.86[ASN][1000 genomes]
rs73603798	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295220	1.00[ASN][1000 genomes]
rs9456855	0.85[ASN][1000 genomes]
rs9456856	0.85[ASN][1000 genomes]
rs9456857	0.85[ASN][1000 genomes]
rs9456858	0.85[ASN][1000 genomes]
rs9458793	0.83[EUR][1000 genomes]
rs9458798	1.00[CHB][hapmap]
rs9458802	0.85[ASN][1000 genomes]
rs9458803	0.85[ASN][1000 genomes]
rs9458805	0.85[ASN][1000 genomes]
rs9458806	0.85[ASN][1000 genomes]
rs9458807	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163745600-163773600	Enhancers	Brain Substantia Nigra	brain
2	chr6:163764000-163768600	Enhancers	Right Ventricle	heart
3	chr6:163764400-163769400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:163765000-163774000	Weak transcription	Spleen	Spleen
5	chr6:163765600-163773000	Enhancers	Brain Angular Gyrus	brain
6	chr6:163766000-163771400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:163766800-163768600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr6:163767000-163768600	Enhancers	Placenta	Placenta
9	chr6:163767200-163768600	Enhancers	Fetal Stomach	stomach
10	chr6:163767200-163770200	Enhancers	Fetal Heart	heart
11	chr6:163767400-163768600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:163767400-163768600	Enhancers	NH-A	brain
13	chr6:163767400-163769000	Enhancers	Hela-S3	cervix
14	chr6:163767600-163770200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:163767600-163776200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:163767600-163776600	Enhancers	Brain Cingulate Gyrus	brain
17	chr6:163767800-163768600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:163767800-163768800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:163767800-163768800	Enhancers	Fetal Muscle Leg	muscle
20	chr6:163767800-163768800	Enhancers	NHDF-Ad	bronchial
21	chr6:163767800-163768800	Enhancers	NHEK	skin
22	chr6:163768000-163768600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:163768000-163768600	Enhancers	Esophagus	oesophagus
24	chr6:163768000-163768600	Enhancers	HUVEC	blood vessel
25	chr6:163768000-163768800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:163768000-163769800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:163768000-163770400	Enhancers	HSMMtube	muscle
28	chr6:163768000-163770600	Enhancers	Brain Anterior Caudate	brain
29	chr6:163768200-163768800	Enhancers	Fetal Muscle Trunk	muscle
30	chr6:163768200-163769200	Enhancers	HSMM	muscle
31	chr6:163768200-163769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:163768200-163769600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:163768200-163770000	Enhancers	Brain Hippocampus Middle	brain
34	chr6:163768200-163770200	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:163768200-163771800	Weak transcription	Fetal Brain Male	brain
36	chr6:163768200-163775600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:163768200-163776400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:163768200-163776400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:163768400-163768600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr6:163768400-163768800	Weak transcription	Psoas Muscle	Psoas
41	chr6:163768400-163769600	Weak transcription	Left Ventricle	heart
42	chr6:163768400-163770400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:163768400-163771600	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr6:163768400-163772000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:163768400-163773400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:163768400-163775800	Weak transcription	Right Atrium	heart

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