Variant report

Variant	rs9458846
Chromosome Location	chr6:163938331-163938332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163936784..163940539-chr6:163940693..163944816,5	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12525340	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28546104	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28726366	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6455905	0.81[GIH][hapmap]
rs6902608	0.90[GIH][hapmap]
rs7770852	0.90[GIH][hapmap]
rs878096	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9295221	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9458828	0.90[GIH][hapmap]
rs9458831	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9458836	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9458841	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458844	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458850	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458853	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458854	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9458855	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458856	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458859	0.90[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv524205	chr6:163919517-163938331	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2763608	chr6:163920117-163943429	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1027863	chr6:163934616-163965216	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163926600-163946200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:163926600-163946600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:163926600-163991800	Weak transcription	Esophagus	oesophagus
4	chr6:163927200-163951600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:163928200-163951600	Weak transcription	Spleen	Spleen
6	chr6:163928600-163938400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:163928600-163941000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:163928800-163942800	Weak transcription	HSMM	muscle
9	chr6:163928800-163944000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:163928800-163946600	Weak transcription	HUVEC	blood vessel
11	chr6:163929000-163947200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:163929200-163946600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:163929200-163946800	Weak transcription	HMEC	breast
14	chr6:163929400-163943800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:163929400-163946600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:163929600-163940000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:163929600-163947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:163929600-163950800	Weak transcription	Fetal Lung	lung
19	chr6:163929600-163951600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:163929800-163957000	Weak transcription	Primary B cells from cord blood	blood
21	chr6:163930400-163940400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:163930400-163941000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:163930600-163943600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:163930600-163950200	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:163933400-163939800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:163934000-163939800	Enhancers	Fetal Heart	heart
27	chr6:163934200-163946600	Weak transcription	NHEK	skin
28	chr6:163934200-163949200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:163935200-163938400	Weak transcription	K562	blood
30	chr6:163935200-163939800	Weak transcription	Brain Anterior Caudate	brain
31	chr6:163935200-163939800	Weak transcription	Placenta	Placenta
32	chr6:163935200-163940200	Weak transcription	Left Ventricle	heart
33	chr6:163935200-163940200	Weak transcription	Psoas Muscle	Psoas
34	chr6:163935200-163940400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:163935200-163943800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:163935200-163946000	Weak transcription	A549	lung
37	chr6:163935200-163946400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:163935200-163946800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:163935200-163947400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:163935200-163950600	Weak transcription	Ovary	ovary
41	chr6:163935200-163952200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:163935200-163958800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:163935200-163959400	Weak transcription	Lung	lung
44	chr6:163935400-163943000	Weak transcription	Liver	Liver
45	chr6:163935400-163951600	Weak transcription	Pancreas	Pancrea
46	chr6:163935800-163943000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:163936400-163940000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:163936800-163939800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr6:163936800-163947200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:163936800-163953600	Enhancers	Brain Hippocampus Middle	brain

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