Variant report

Variant	rs9458863
Chromosome Location	chr6:164010173-164010174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:164009698-164010345	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000228692	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4709725	0.81[ASN][1000 genomes]
rs4709726	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9347768	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163998200-164010800	Enhancers	Brain Cingulate Gyrus	brain
2	chr6:164007200-164010200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:164007200-164010400	Enhancers	HSMMtube	muscle
4	chr6:164007400-164011000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:164007800-164010600	Weak transcription	Fetal Heart	heart
6	chr6:164008200-164011400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:164008600-164010200	Enhancers	Brain Angular Gyrus	brain
8	chr6:164008600-164010200	Enhancers	NH-A	brain
9	chr6:164009200-164010200	Weak transcription	HUVEC	blood vessel
10	chr6:164009200-164011200	Enhancers	Brain Anterior Caudate	brain
11	chr6:164009400-164010200	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr6:164009400-164010200	Enhancers	Fetal Muscle Leg	muscle
13	chr6:164009600-164011000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:164009600-164011600	Weak transcription	Right Ventricle	heart
15	chr6:164009800-164010200	Enhancers	Psoas Muscle	Psoas
16	chr6:164009800-164010800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:164009800-164011600	Weak transcription	NHEK	skin
18	chr6:164010000-164010400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:164010000-164010400	Enhancers	Brain Substantia Nigra	brain
20	chr6:164010000-164011000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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