Variant report

Variant	rs9458878
Chromosome Location	chr6:164073368-164073369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164072890..164076945-chr6:164079644..164083492,4	K562	blood:
2	chr6:164072890..164075132-chr6:164081239..164084197,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10806781	0.93[ASN][1000 genomes]
rs12191684	0.96[ASN][1000 genomes]
rs12207069	0.80[ASN][1000 genomes]
rs12209057	0.93[ASN][1000 genomes]
rs12526417	0.96[ASN][1000 genomes]
rs1322888	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2146465	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4289623	1.00[JPT][hapmap]
rs4709001	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742763	0.83[AMR][1000 genomes]
rs7743998	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7744332	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7756747	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7763577	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9364696	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9364697	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458875	0.93[ASN][1000 genomes]
rs9458876	0.93[ASN][1000 genomes]
rs9458879	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9458878	KLF6	trans	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164057200-164092400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164071400-164073400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:164071800-164074000	Enhancers	Fetal Muscle Leg	muscle
4	chr6:164072000-164074000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:164072200-164074000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:164072400-164073800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164072600-164073800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:164072600-164073800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:164072800-164074000	Enhancers	Adipose Nuclei	Adipose
10	chr6:164073000-164073400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:164073000-164073600	Enhancers	Brain Hippocampus Middle	brain
12	chr6:164073000-164073600	Enhancers	Fetal Heart	heart
13	chr6:164073000-164073600	Enhancers	Right Atrium	heart
14	chr6:164073000-164073800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
15	chr6:164073000-164074000	Enhancers	Brain Germinal Matrix	brain
16	chr6:164073000-164074000	Enhancers	Esophagus	oesophagus
17	chr6:164073000-164074000	Enhancers	Fetal Brain Male	brain
18	chr6:164073200-164073600	Enhancers	Brain Anterior Caudate	brain
19	chr6:164073200-164073800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:164073200-164073800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:164073200-164073800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:164073200-164073800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:164073200-164074000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:164073200-164074000	Bivalent Enhancer	HepG2	liver
25	chr6:164073200-164074000	Enhancers	HSMMtube	muscle
26	chr6:164073200-164074200	Enhancers	Placenta	Placenta
27	chr6:164073200-164075000	Enhancers	Primary monocytes fromperipheralblood	blood

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