Variant report

Variant	rs9459370
Chromosome Location	chr6:165744991-165744992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11751648	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs12181711	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12182419	0.87[EUR][1000 genomes]
rs16897776	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs1999548	0.83[LWK][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35370121	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60201680	0.86[EUR][1000 genomes]
rs73026280	0.93[EUR][1000 genomes]
rs73026292	0.94[EUR][1000 genomes]
rs73028225	0.96[EUR][1000 genomes]
rs73028227	0.93[EUR][1000 genomes]
rs73030134	0.85[EUR][1000 genomes]
rs73030135	0.90[EUR][1000 genomes]
rs73030152	0.90[EUR][1000 genomes]
rs73030165	0.90[EUR][1000 genomes]
rs73030170	0.84[EUR][1000 genomes]
rs73788354	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9457071	0.91[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.94[EUR][1000 genomes]
rs9457072	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs9457073	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9457075	0.94[EUR][1000 genomes]
rs9457076	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9457078	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs9457081	0.91[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs9459362	0.94[EUR][1000 genomes]
rs9459368	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9459373	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9459374	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9459377	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9459378	0.93[EUR][1000 genomes]
rs9459380	0.90[EUR][1000 genomes]
rs9459382	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs9459383	0.90[EUR][1000 genomes]
rs9459386	0.90[EUR][1000 genomes]
rs9459403	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs9459404	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs9459407	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs9459408	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs9459409	0.91[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv5586	chr6:165694448-165747217	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv508438	chr6:165703355-165760649	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165735600-165746200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:165736000-165746400	Weak transcription	HSMMtube	muscle
3	chr6:165738200-165746200	Weak transcription	Left Ventricle	heart
4	chr6:165740400-165746400	Weak transcription	Right Ventricle	heart
5	chr6:165740400-165754200	Weak transcription	Fetal Brain Male	brain
6	chr6:165740400-165760800	Weak transcription	Fetal Kidney	kidney
7	chr6:165740600-165749000	Weak transcription	Placenta	Placenta
8	chr6:165741600-165754000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:165741800-165748800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:165743000-165746400	Weak transcription	Brain Germinal Matrix	brain
11	chr6:165743200-165753000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:165743600-165746200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:165743600-165746200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:165743800-165746000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:165744000-165749000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:165744000-165769000	Weak transcription	Ovary	ovary
17	chr6:165744400-165746200	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:165744400-165746200	Weak transcription	Fetal Stomach	stomach
19	chr6:165744600-165746400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:165744600-165747400	Strong transcription	HSMM	muscle
21	chr6:165744600-165751000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:165744800-165747800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:165744800-165749000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:165744800-165763600	Weak transcription	Brain Anterior Caudate	brain
25	chr6:165744800-165801200	Weak transcription	Hela-S3	cervix

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