Variant report

Variant	rs9459373
Chromosome Location	chr6:165751677-165751678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11751648	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs12181711	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12182419	0.92[EUR][1000 genomes]
rs16897776	0.91[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs1999548	0.83[ASW][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35370121	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60201680	0.83[EUR][1000 genomes]
rs73026280	0.98[EUR][1000 genomes]
rs73026292	1.00[EUR][1000 genomes]
rs73028225	0.95[EUR][1000 genomes]
rs73028227	0.98[EUR][1000 genomes]
rs73030134	0.91[EUR][1000 genomes]
rs73030135	0.95[EUR][1000 genomes]
rs73030152	0.89[EUR][1000 genomes]
rs73030165	0.89[EUR][1000 genomes]
rs73030170	0.89[EUR][1000 genomes]
rs73788354	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9457071	0.91[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes]
rs9457072	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs9457073	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9457075	0.94[EUR][1000 genomes]
rs9457076	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9457078	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs9457081	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs9459362	1.00[EUR][1000 genomes]
rs9459368	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9459370	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9459374	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9459377	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9459378	0.98[EUR][1000 genomes]
rs9459380	0.95[EUR][1000 genomes]
rs9459382	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs9459383	0.90[EUR][1000 genomes]
rs9459386	0.89[EUR][1000 genomes]
rs9459403	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs9459404	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs9459407	0.91[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs9459408	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs9459409	0.91[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv508438	chr6:165703355-165760649	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165740400-165754200	Weak transcription	Fetal Brain Male	brain
2	chr6:165740400-165760800	Weak transcription	Fetal Kidney	kidney
3	chr6:165741600-165754000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:165743200-165753000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:165744000-165769000	Weak transcription	Ovary	ovary
6	chr6:165744800-165763600	Weak transcription	Brain Anterior Caudate	brain
7	chr6:165744800-165801200	Weak transcription	Hela-S3	cervix
8	chr6:165745200-165770000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:165745400-165763000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:165745600-165802800	Weak transcription	Fetal Heart	heart
11	chr6:165747400-165763000	Weak transcription	Fetal Brain Female	brain
12	chr6:165747400-165802600	Weak transcription	HSMMtube	muscle
13	chr6:165747600-165752600	Weak transcription	Gastric	stomach
14	chr6:165747600-165763200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:165747600-165853000	Weak transcription	A549	lung
16	chr6:165747800-165760800	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:165749200-165769800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:165749400-165754000	Weak transcription	Brain Germinal Matrix	brain
19	chr6:165749400-165754200	Weak transcription	Aorta	Aorta
20	chr6:165749600-165752000	Weak transcription	Left Ventricle	heart
21	chr6:165749600-165762600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:165749600-165763200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:165749600-165763200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:165749600-165763400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:165749800-165762400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:165749800-165762800	Weak transcription	Right Ventricle	heart
27	chr6:165749800-165763200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:165749800-165763200	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:165749800-165763200	Weak transcription	Fetal Stomach	stomach
30	chr6:165749800-165775000	Weak transcription	Fetal Lung	lung
31	chr6:165751400-165752800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:165751400-165758400	Strong transcription	HSMM	muscle
33	chr6:165751600-165753400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links