Variant report

Variant	rs9459683
Chromosome Location	chr6:166908944-166908945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166908101..166910132-chr6:166956350..166959171,2	K562	blood:

Variant related genes	Relation type
ENSG00000071242	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16899023	1.00[AMR][1000 genomes]
rs16899026	1.00[AMR][1000 genomes]
rs59912183	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73253217	1.00[AMR][1000 genomes]
rs9459682	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886939	chr6:166859725-166922813	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
2	chr6:166862400-166920600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:166884600-166911400	Weak transcription	HMEC	breast
4	chr6:166890600-166925200	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:166892600-166910600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:166893000-166923200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:166893600-166921400	Weak transcription	Fetal Brain Male	brain
8	chr6:166894800-166928400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:166897600-166922400	Weak transcription	HSMMtube	muscle
10	chr6:166899400-166929400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:166900600-166912200	Weak transcription	Fetal Intestine Large	intestine
12	chr6:166901000-166911800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:166901000-166954800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:166901400-166922000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:166902200-166954400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:166902400-166917600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:166902400-166922600	Weak transcription	Thymus	Thymus
18	chr6:166902400-166923600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:166902600-166910800	Weak transcription	Primary T cells from cord blood	blood
20	chr6:166902600-166910800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:166902600-166916800	Weak transcription	Primary B cells from cord blood	blood
22	chr6:166902600-166952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:166902800-166909200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:166903000-166915800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:166903000-166919200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:166903000-166925400	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:166903200-166916000	Weak transcription	NHDF-Ad	bronchial
28	chr6:166903600-166916200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:166903800-166911600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:166903800-166911800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:166903800-166916200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:166903800-166916600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:166903800-166922000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:166904000-166916400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:166904000-166923800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:166905000-166910800	Weak transcription	NH-A	brain
37	chr6:166905000-166916000	Weak transcription	Right Atrium	heart
38	chr6:166905000-166916600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:166905000-166925200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:166905000-166928200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:166905000-166928400	Weak transcription	HSMM	muscle
42	chr6:166905200-166909200	Weak transcription	Fetal Lung	lung
43	chr6:166906000-166916000	Weak transcription	HUVEC	blood vessel
44	chr6:166906000-166916400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:166906200-166921000	Weak transcription	Fetal Kidney	kidney
46	chr6:166906400-166909000	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:166906400-166915200	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:166906600-166909800	Strong transcription	Pancreas	Pancrea
49	chr6:166906600-166911000	Strong transcription	Fetal Intestine Small	intestine
50	chr6:166906600-166913800	Strong transcription	Ovary	ovary

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