Variant report

Variant	rs9459799
Chromosome Location	chr6:167327523-167327524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167324856..167326395-chr6:167326764..167328274,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11159	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13201493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201941	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202098	0.84[EUR][1000 genomes]
rs13213544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220568	1.00[CEU][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34101156	0.87[EUR][1000 genomes]
rs34116393	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34159386	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34431091	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35147976	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35206089	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35614625	0.87[EUR][1000 genomes]
rs35615089	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35731380	0.89[EUR][1000 genomes]
rs36032379	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58251236	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59988493	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60908348	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916542	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71571463	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571464	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71571465	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71571466	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7740833	0.89[EUR][1000 genomes]
rs7755545	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9295378	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9295379	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9295380	0.81[EUR][1000 genomes]
rs9295382	0.87[EUR][1000 genomes]
rs9457239	0.91[EUR][1000 genomes]
rs9457243	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9457244	0.85[EUR][1000 genomes]
rs9457245	0.84[EUR][1000 genomes]
rs9459800	0.89[EUR][1000 genomes]
rs9459802	0.89[EUR][1000 genomes]
rs9459803	0.89[EUR][1000 genomes]
rs9459804	0.87[EUR][1000 genomes]
rs9459806	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv605327	chr6:167185674-167360389	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1027314	chr6:167194653-167355961	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv538542	chr6:167194653-167355961	Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv605332	chr6:167198027-167353701	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
10	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
11	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
12	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
13	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167315800-167341600	Weak transcription	Pancreas	Pancrea
2	chr6:167318400-167343800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:167318600-167342400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:167319200-167327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:167321200-167327800	Weak transcription	Brain Substantia Nigra	brain
6	chr6:167321200-167340000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:167321600-167331000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:167321600-167340600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:167321800-167342200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:167322000-167340200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:167322000-167340600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:167322000-167341600	Weak transcription	Gastric	stomach
13	chr6:167322200-167330400	Weak transcription	HepG2	liver
14	chr6:167322400-167340000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:167322600-167330200	Weak transcription	Primary T cells from cord blood	blood
16	chr6:167322600-167340000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:167323000-167332200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:167323400-167339200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:167325400-167329200	Weak transcription	K562	blood
20	chr6:167326000-167328200	Enhancers	Brain Germinal Matrix	brain
21	chr6:167326000-167328400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:167326200-167330200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:167326600-167340400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:167327000-167329200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:167327400-167327600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr6:167327400-167330000	Weak transcription	Primary B cells from cord blood	blood

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