Variant report

Variant	rs9459871
Chromosome Location	chr6:167499092-167499093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10946205	0.80[ASN][1000 genomes]
rs10946208	0.86[EUR][1000 genomes]
rs12203510	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12213683	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12523712	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12527827	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12528323	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12528689	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12529238	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12529876	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12529959	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13199692	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13208636	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13210649	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13213249	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1358882	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1358883	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1407315	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17615336	0.83[AMR][1000 genomes]
rs1810644	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1810645	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2001114	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2001115	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2017338	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs204295	0.89[ASN][1000 genomes]
rs2181058	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2239826	0.82[AMR][1000 genomes]
rs2285147	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2285148	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4710176	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62436765	0.81[EUR][1000 genomes]
rs6456149	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6456150	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6456151	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6456153	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6456154	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6902119	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6909180	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6909475	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6909502	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6918286	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6921588	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925969	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6932740	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6934043	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6936261	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6941355	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs720325	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7742305	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7748224	0.83[EUR][1000 genomes]
rs7760495	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7761977	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7762156	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs911632	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9457261	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9457268	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9459853	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9459862	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9459870	0.85[EUR][1000 genomes]
rs9459872	0.83[AMR][1000 genomes]
rs9459874	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
6	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
7	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
8	nsv886943	chr6:167440244-167502638	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2752099	chr6:167448181-167579102	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1018193	chr6:167491589-167797294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv538544	chr6:167491589-167797294	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9459871	RNASET2	cis	Esophagus Mucosa	GTEx
rs9459871	AL133458.1	cis	Whole Blood	GTEx
rs9459871	RNASET2	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167492000-167503400	Weak transcription	Right Atrium	heart

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