Variant report

Variant	rs9461112
Chromosome Location	chr6:25154462-25154463
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:25154053..25159519-chr6:25164374..25167875,7	MCF-7	breast:
2	chr6:25151401..25154186-chr6:25154333..25156125,2	MCF-7	breast:
3	chr6:25150825..25153623-chr6:25154043..25156150,2	K562	blood:

Variant related genes	Relation type
ENSG00000262400	Chromatin interaction
ENSG00000168405	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1813886	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900552	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900553	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456651	1.00[ASN][1000 genomes]
rs6456653	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907841	1.00[ASN][1000 genomes]
rs6925861	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739830	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741883	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467427	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv470806	chr6:25082262-25156197	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv462662	chr6:25084718-25165486	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv601166	chr6:25084718-25165486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1020774	chr6:25154152-25285679	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv538161	chr6:25154152-25285679	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25139200-25154800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:25143400-25154600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:25150200-25155200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:25150400-25155400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:25150600-25155000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:25151200-25155600	Weak transcription	Right Atrium	heart
7	chr6:25152600-25155200	Genic enhancers	Dnd41	blood
8	chr6:25153000-25156200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:25153000-25158000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:25153200-25155400	Weak transcription	Lung	lung
11	chr6:25153400-25155000	Enhancers	Pancreas	Pancrea
12	chr6:25153600-25154600	Weak transcription	Thymus	Thymus
13	chr6:25153600-25155600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:25153800-25155000	Enhancers	Fetal Kidney	kidney
15	chr6:25154000-25156600	Genic enhancers	Fetal Thymus	thymus
16	chr6:25154000-25157600	Enhancers	Placenta	Placenta
17	chr6:25154200-25154600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:25154200-25155000	Enhancers	Fetal Intestine Large	intestine
19	chr6:25154200-25155000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr6:25154200-25155600	Enhancers	Fetal Intestine Small	intestine
21	chr6:25154200-25155800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:25154200-25155800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:25154400-25155200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:25154400-25155400	Weak transcription	Esophagus	oesophagus

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