Variant report

Variant	rs9461277
Chromosome Location	chr6:26608319-26608320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26606364..26609105-chr6:27098413..27100621,3	MCF-7	breast:
2	chr6:26607766..26609667-chr6:26613231..26615563,3	K562	blood:
3	chr6:26607631..26609334-chr6:27100262..27102144,2	K562	blood:
4	chr6:26607363..26608609-chr6:27046357..27047229,6	MCF-7	breast:
5	chr6:26606677..26610844-chr6:27101596..27105615,4	K562	blood:
6	chr6:26205953..26207614-chr6:26606621..26609414,2	K562	blood:
7	chr6:26604908..26609583-chr6:27112417..27116063,5	MCF-7	breast:
8	chr6:26606147..26610577-chr6:26986450..26989237,3	MCF-7	breast:
9	chr6:26602321..26604029-chr6:26608218..26609834,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124635	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000238621	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000271071	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000224843	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57538609	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57768474	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59034876	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6902081	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6910849	0.88[ASN][1000 genomes]
rs6910871	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911476	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73397148	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9467803	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467816	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9467818	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9467824	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9467838	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26600000-26614000	Weak transcription	Spleen	Spleen
2	chr6:26601400-26610200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:26607800-26608400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:26607800-26608400	Active TSS	Colon Smooth Muscle	Colon
5	chr6:26607800-26608600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:26608200-26608400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:26608200-26608400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:26608200-26608400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:26608200-26608400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:26608200-26608400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:26608200-26608400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr6:26608200-26608400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr6:26608200-26608400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:26608200-26608400	Enhancers	GM12878-XiMat	blood
15	chr6:26608200-26608400	Enhancers	Hela-S3	cervix
16	chr6:26608200-26608400	Flanking Active TSS	HepG2	liver
17	chr6:26608200-26608600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:26608200-26608800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:26608200-26611600	Weak transcription	K562	blood
20	chr6:26608200-26613800	Weak transcription	Right Atrium	heart

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