Variant report

Variant	rs6902081
Chromosome Location	chr6:26630141-26630142
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:26617539..26619687-chr6:26627974..26630970,2	K562	blood:
2	chr6:26595203..26596713-chr6:26627322..26630167,2	K562	blood:
3	chr6:26626416..26630175-chr6:26630389..26634346,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABT1-5	chr6:26630055-26634786	NONHSAT108301

Variant related genes	Relation type
ENSG00000218346	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs13437351	1.00[JPT][hapmap]
rs13978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2281027	1.00[JPT][hapmap]
rs3734541	1.00[JPT][hapmap]
rs57538609	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57768474	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58434342	0.88[ASN][1000 genomes]
rs59034876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456725	1.00[JPT][hapmap]
rs6456726	1.00[JPT][hapmap]
rs6907857	1.00[JPT][hapmap]
rs6910849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6910871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6910921	1.00[JPT][hapmap]
rs6910993	1.00[JPT][hapmap]
rs6911470	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs6911476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6929846	1.00[JPT][hapmap]
rs73397148	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751645	1.00[JPT][hapmap]
rs7769926	1.00[JPT][hapmap]
rs7773913	1.00[JPT][hapmap]
rs9295692	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9295700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9461252	1.00[JPT][hapmap]
rs9461253	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9461254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs9461277	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9461285	0.88[ASN][1000 genomes]
rs9461291	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467757	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9467759	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs9467760	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9467761	1.00[JPT][hapmap]
rs9467768	1.00[JPT][hapmap]
rs9467771	1.00[JPT][hapmap]
rs9467788	1.00[JPT][hapmap]
rs9467803	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9467816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467817	0.88[ASN][1000 genomes]
rs9467818	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467824	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467838	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26625400-26639200	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:26629400-26639200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:26629600-26635400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:26629800-26631400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:26629800-26640000	Weak transcription	Left Ventricle	heart

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