Variant report

Variant	rs13437351
Chromosome Location	chr6:26475784-26475785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26474445..26476878-chr6:26512542..26515226,3	K562	blood:
2	chr6:26472114..26481394-chr6:26482721..26495847,23	K562	blood:
3	chr6:26474221..26477564-chr6:26521186..26523081,3	K562	blood:
4	chr6:26314124..26316500-chr6:26474166..26476547,2	K562	blood:
5	chr6:26474337..26476257-chr6:26519630..26521866,2	MCF-7	breast:
6	chr6:26156628..26158808-chr6:26474596..26476734,2	MCF-7	breast:
7	chr6:26470620..26472220-chr6:26474706..26477657,2	MCF-7	breast:
8	chr6:26462941..26465022-chr6:26475685..26477185,2	K562	blood:
9	chr6:26342125..26345094-chr6:26474079..26475850,2	K562	blood:
10	chr6:26343594..26345212-chr6:26474079..26475915,2	K562	blood:
11	chr6:26474090..26476155-chr6:26476306..26478036,2	MCF-7	breast:
12	chr6:26472961..26477109-chr6:26519664..26522390,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000199289	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000158373	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1131936	1.00[JPT][hapmap]
rs11963680	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966630	0.89[ASN][1000 genomes]
rs12208788	1.00[JPT][hapmap]
rs13437008	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13437012	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13978	1.00[JPT][hapmap]
rs16891666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1804836	0.89[ASN][1000 genomes]
rs2281027	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2393650	0.82[ASN][1000 genomes]
rs3734541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757141	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3757147	1.00[JPT][hapmap]
rs3846841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3846842	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3857549	1.00[JPT][hapmap]
rs3885849	0.89[ASN][1000 genomes]
rs4422619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712986	1.00[JPT][hapmap]
rs4712988	0.89[ASN][1000 genomes]
rs58380352	0.92[ASN][1000 genomes]
rs59121933	0.89[ASN][1000 genomes]
rs59621581	0.96[ASN][1000 genomes]
rs6456720	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6456725	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456726	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456730	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6902081	1.00[JPT][hapmap]
rs6907857	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910849	1.00[JPT][hapmap]
rs6910871	1.00[JPT][hapmap]
rs6910921	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910993	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911470	0.83[ASW][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.85[MKK][hapmap];0.83[AMR][1000 genomes]
rs6911476	1.00[JPT][hapmap]
rs6929846	1.00[JPT][hapmap]
rs6935678	1.00[ASN][1000 genomes]
rs6941018	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72500814	0.89[ASN][1000 genomes]
rs7355	1.00[JPT][hapmap]
rs7356849	1.00[JPT][hapmap]
rs7356980	0.89[ASN][1000 genomes]
rs7356982	1.00[JPT][hapmap]
rs7751645	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7769926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773913	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9104	1.00[JPT][hapmap]
rs9295692	1.00[JPT][hapmap]
rs9295700	1.00[JPT][hapmap]
rs9461247	0.89[ASN][1000 genomes]
rs9461252	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9461253	1.00[JPT][hapmap]
rs9461254	1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9461256	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467748	1.00[JPT][hapmap]
rs9467749	0.89[ASN][1000 genomes]
rs9467753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9467755	0.89[ASN][1000 genomes]
rs9467756	1.00[ASN][1000 genomes]
rs9467757	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9467759	1.00[JPT][hapmap]
rs9467760	0.85[JPT][hapmap];0.83[AMR][1000 genomes]
rs9467761	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467762	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9467765	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467768	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467769	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467771	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467788	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9467803	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
6	nsv1031938	chr6:26467182-26501897	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26469600-26476600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:26471800-26476400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:26471800-26478000	Weak transcription	Lung	lung
4	chr6:26473600-26476400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:26474200-26475800	Flanking Active TSS	K562	blood
6	chr6:26474400-26475800	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr6:26474600-26475800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:26474600-26475800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr6:26474600-26475800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr6:26474600-26475800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr6:26474600-26476000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:26474600-26476000	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr6:26474600-26477000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:26474800-26475800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr6:26474800-26475800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:26474800-26475800	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr6:26474800-26475800	Flanking Active TSS	Rectal Smooth Muscle	rectum
18	chr6:26474800-26476000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr6:26475000-26475800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:26475000-26475800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr6:26475000-26475800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr6:26475000-26475800	Enhancers	Fetal Kidney	kidney
23	chr6:26475000-26475800	Enhancers	Fetal Lung	lung
24	chr6:26475000-26475800	Flanking Active TSS	Dnd41	blood
25	chr6:26475000-26476200	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr6:26475000-26476600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:26475000-26476600	Enhancers	Hela-S3	cervix
28	chr6:26475000-26476600	Enhancers	NH-A	brain
29	chr6:26475000-26476800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:26475000-26476800	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr6:26475000-26477000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr6:26475000-26477000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr6:26475000-26477200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:26475000-26477200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:26475200-26475800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr6:26475200-26475800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:26475200-26475800	Enhancers	Brain Anterior Caudate	brain
38	chr6:26475200-26475800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr6:26475200-26475800	Flanking Active TSS	GM12878-XiMat	blood
40	chr6:26475200-26475800	Enhancers	HMEC	breast
41	chr6:26475200-26475800	Enhancers	NHEK	skin
42	chr6:26475200-26476000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:26475200-26476000	Enhancers	Colon Smooth Muscle	Colon
44	chr6:26475200-26476000	Flanking Active TSS	HepG2	liver
45	chr6:26475200-26476400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:26475200-26476400	Enhancers	Fetal Intestine Small	intestine
47	chr6:26475200-26476600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:26475200-26476600	Enhancers	Fetal Thymus	thymus
49	chr6:26475200-26476600	Enhancers	HUVEC	blood vessel
50	chr6:26475200-26476600	Enhancers	NHDF-Ad	bronchial

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