Variant report

Variant	rs7773913
Chromosome Location	chr6:26473983-26473984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26464821..26467283-chr6:26470555..26474076,4	MCF-7	breast:
2	chr6:26457588..26459634-chr6:26472542..26475354,3	MCF-7	breast:
3	chr6:26472114..26481394-chr6:26482721..26495847,23	K562	blood:
4	chr6:26469351..26470926-chr6:26472067..26474626,2	K562	blood:
5	chr6:26382919..26385188-chr6:26473437..26474979,2	K562	blood:
6	chr6:26473312..26475713-chr6:26519494..26521271,2	MCF-7	breast:
7	chr6:26471319..26475410-chr6:26567164..26571952,5	K562	blood:
8	chr6:26324380..26326185-chr6:26473831..26475753,2	K562	blood:
9	chr6:26472961..26477109-chr6:26519664..26522390,3	K562	blood:
10	chr6:26456009..26458208-chr6:26473841..26475463,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000199289	Chromatin interaction
ENSG00000112763	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000124508	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1131936	1.00[JPT][hapmap]
rs11963680	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966630	0.89[ASN][1000 genomes]
rs12208788	1.00[JPT][hapmap]
rs13437008	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13437012	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437351	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13978	1.00[JPT][hapmap]
rs16891666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1804836	0.89[ASN][1000 genomes]
rs2281027	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2393650	0.82[ASN][1000 genomes]
rs3734541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757141	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3757147	1.00[JPT][hapmap]
rs3846841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3846842	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3857549	1.00[JPT][hapmap]
rs3885849	0.89[ASN][1000 genomes]
rs4422619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712986	1.00[JPT][hapmap]
rs4712988	0.89[ASN][1000 genomes]
rs58380352	0.92[ASN][1000 genomes]
rs59121933	0.89[ASN][1000 genomes]
rs59621581	0.96[ASN][1000 genomes]
rs6456720	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6456725	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456726	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456730	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6902081	1.00[JPT][hapmap]
rs6907857	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910849	1.00[JPT][hapmap]
rs6910871	1.00[JPT][hapmap]
rs6910921	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910993	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911470	0.83[ASW][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.85[MKK][hapmap];0.83[AMR][1000 genomes]
rs6911476	1.00[JPT][hapmap]
rs6929846	1.00[JPT][hapmap]
rs6935678	1.00[ASN][1000 genomes]
rs6941018	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72500814	0.89[ASN][1000 genomes]
rs7355	1.00[JPT][hapmap]
rs7356849	1.00[JPT][hapmap]
rs7356980	0.89[ASN][1000 genomes]
rs7356982	1.00[JPT][hapmap]
rs7751645	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7769926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9104	1.00[JPT][hapmap]
rs9295692	1.00[JPT][hapmap]
rs9295700	1.00[JPT][hapmap]
rs9461247	0.89[ASN][1000 genomes]
rs9461252	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9461253	1.00[JPT][hapmap]
rs9461254	1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9461256	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467748	1.00[JPT][hapmap]
rs9467749	0.89[ASN][1000 genomes]
rs9467753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9467755	0.89[ASN][1000 genomes]
rs9467756	1.00[ASN][1000 genomes]
rs9467757	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9467759	1.00[JPT][hapmap]
rs9467760	0.85[JPT][hapmap];0.83[AMR][1000 genomes]
rs9467761	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467762	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9467765	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467768	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467769	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467771	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467788	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9467803	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
6	nsv1031938	chr6:26467182-26501897	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26469600-26474000	Weak transcription	HSMM	muscle
2	chr6:26469600-26474200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:26469600-26476600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:26471800-26474000	Weak transcription	Left Ventricle	heart
5	chr6:26471800-26474200	Weak transcription	Colonic Mucosa	Colon
6	chr6:26471800-26474600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:26471800-26474600	Weak transcription	Esophagus	oesophagus
8	chr6:26471800-26474800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:26471800-26474800	Weak transcription	Small Intestine	intestine
10	chr6:26471800-26475000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:26471800-26475400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:26471800-26476400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:26471800-26478000	Weak transcription	Lung	lung
14	chr6:26472800-26474000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr6:26473000-26474000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr6:26473000-26474000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr6:26473000-26474000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr6:26473200-26474000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:26473200-26474000	Flanking Active TSS	Dnd41	blood
20	chr6:26473200-26475200	Weak transcription	Spleen	Spleen
21	chr6:26473400-26474000	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr6:26473400-26474000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:26473400-26474000	Flanking Active TSS	GM12878-XiMat	blood
24	chr6:26473400-26474200	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr6:26473400-26474800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:26473400-26475000	Active TSS	Stomach Smooth Muscle	stomach
27	chr6:26473600-26474000	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr6:26473600-26474000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr6:26473600-26474000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr6:26473600-26474000	Flanking Active TSS	HepG2	liver
31	chr6:26473600-26474200	Active TSS	K562	blood
32	chr6:26473600-26474600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:26473600-26474600	Active TSS	HMEC	breast
34	chr6:26473600-26474600	Active TSS	NHEK	skin
35	chr6:26473600-26474800	Active TSS	Primary T cells fromperipheralblood	blood
36	chr6:26473600-26474800	Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr6:26473600-26474800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:26473600-26474800	Active TSS	Brain Hippocampus Middle	brain
39	chr6:26473600-26474800	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr6:26473600-26474800	Active TSS	Fetal Lung	lung
41	chr6:26473600-26474800	Active TSS	Fetal Muscle Leg	muscle
42	chr6:26473600-26474800	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr6:26473600-26474800	Active TSS	NHDF-Ad	bronchial
44	chr6:26473600-26474800	Active TSS	Osteobl	bone
45	chr6:26473600-26475000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:26473600-26475000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:26473600-26475200	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr6:26473600-26475200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:26473600-26475400	Active TSS	A549	lung
50	chr6:26473600-26475400	Active TSS	HSMMtube	muscle

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