Variant report
| Variant | rs9461282 |
|---|---|
| Chromosome Location | chr6:26628172-26628173 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000218346 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs12182179 | 1.00[EUR][1000 genomes] |
| rs3762804 | 1.00[EUR][1000 genomes] |
| rs3999250 | 1.00[EUR][1000 genomes] |
| rs56853796 | 1.00[EUR][1000 genomes] |
| rs58699206 | 1.00[EUR][1000 genomes] |
| rs59281843 | 1.00[EUR][1000 genomes] |
| rs61058534 | 1.00[EUR][1000 genomes] |
| rs9295700 | 1.00[EUR][1000 genomes] |
| rs9461269 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9461281 | 1.00[EUR][1000 genomes] |
| rs9461312 | 1.00[EUR][1000 genomes] |
| rs9461319 | 1.00[EUR][1000 genomes] |
| rs9461320 | 1.00[EUR][1000 genomes] |
| rs9461321 | 1.00[EUR][1000 genomes] |
| rs9461323 | 1.00[EUR][1000 genomes] |
| rs9461326 | 1.00[EUR][1000 genomes] |
| rs9467754 | 1.00[EUR][1000 genomes] |
| rs9467758 | 1.00[EUR][1000 genomes] |
| rs9467770 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9467801 | 1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs9467875 | 1.00[EUR][1000 genomes] |
| rs9467917 | 1.00[EUR][1000 genomes] |
| rs9467927 | 1.00[EUR][1000 genomes] |
| rs9467928 | 1.00[EUR][1000 genomes] |
| rs9467934 | 1.00[EUR][1000 genomes] |
| rs9467937 | 1.00[EUR][1000 genomes] |
| rs9467944 | 1.00[EUR][1000 genomes] |
| rs9467945 | 1.00[EUR][1000 genomes] |
| rs9467946 | 1.00[EUR][1000 genomes] |
| rs9467949 | 1.00[EUR][1000 genomes] |
| rs9467958 | 1.00[EUR][1000 genomes] |
| rs9467959 | 1.00[EUR][1000 genomes] |
| rs9467960 | 1.00[EUR][1000 genomes] |
| rs9467962 | 1.00[EUR][1000 genomes] |
| rs9467963 | 1.00[EUR][1000 genomes] |
| rs9467964 | 1.00[EUR][1000 genomes] |
| rs9467967 | 1.00[EUR][1000 genomes] |
| rs9467968 | 1.00[EUR][1000 genomes] |
| rs9467970 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:26625400-26639200 | Weak transcription | Brain Hippocampus Middle | brain |
