Variant report
| Variant | rs9467801 |
|---|---|
| Chromosome Location | chr6:26579276-26579277 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:8 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:26575145..26580691-chr6:26582301..26587887,10 | K562 | blood: | |
| 2 | chr6:26578835..26580691-chr6:26586328..26588441,2 | K562 | blood: | |
| 3 | chr6:26576709..26579469-chr6:26595010..26597747,2 | MCF-7 | breast: | |
| 4 | chr6:26566413..26579648-chr6:26592370..26599609,38 | K562 | blood: | |
| 5 | chr6:26520128..26522932-chr6:26576156..26579285,4 | K562 | blood: | |
| 6 | chr6:26535611..26540047-chr6:26576394..26579600,4 | K562 | blood: | |
| 7 | chr6:26577794..26579941-chr6:27103035..27105397,2 | K562 | blood: | |
| 8 | chr6:26568033..26580216-chr6:26588796..26603066,49 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000182952 | Chromatin interaction |
| ENSG00000146109 | Chromatin interaction |
| ENSG00000228223 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12182179 | 1.00[EUR][1000 genomes] |
| rs3762804 | 1.00[EUR][1000 genomes] |
| rs3999250 | 1.00[EUR][1000 genomes] |
| rs56853796 | 1.00[EUR][1000 genomes] |
| rs59281843 | 1.00[EUR][1000 genomes] |
| rs61058534 | 1.00[EUR][1000 genomes] |
| rs9295700 | 1.00[EUR][1000 genomes] |
| rs9461269 | 1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs9461281 | 1.00[EUR][1000 genomes] |
| rs9461282 | 1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs9467754 | 1.00[EUR][1000 genomes] |
| rs9467758 | 1.00[EUR][1000 genomes] |
| rs9467770 | 1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs9467875 | 1.00[EUR][1000 genomes] |
| rs9467917 | 1.00[EUR][1000 genomes] |
| rs9467927 | 1.00[EUR][1000 genomes] |
| rs9467928 | 1.00[EUR][1000 genomes] |
| rs9467934 | 1.00[EUR][1000 genomes] |
| rs9467937 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029920 | chr6:25638507-26585842 | Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 2 | nsv538162 | chr6:25638507-26585842 | Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 3 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:26578400-26579400 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
