Variant report

Variant	rs9461616
Chromosome Location	chr6:11277326-11277327
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11272801..11275111-chr6:11275402..11277687,3	MCF-7	breast:
2	chr6:11276124..11277756-chr6:11390424..11392088,2	MCF-7	breast:
3	chr6:11230378..11232899-chr6:11276810..11279327,2	MCF-7	breast:
4	chr6:11276034..11278443-chr6:11279810..11281791,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9468792	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11259600-11277800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:11266600-11278800	Enhancers	Fetal Intestine Large	intestine
3	chr6:11269200-11278800	Enhancers	Fetal Intestine Small	intestine
4	chr6:11269200-11281200	Enhancers	Duodenum Mucosa	Duodenum
5	chr6:11271800-11277400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:11271800-11277600	Weak transcription	Right Atrium	heart
7	chr6:11272400-11279400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:11272800-11279600	Enhancers	Fetal Kidney	kidney
9	chr6:11273000-11277600	Weak transcription	Placenta	Placenta
10	chr6:11273000-11277600	Weak transcription	Left Ventricle	heart
11	chr6:11273800-11278600	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr6:11273800-11278800	Enhancers	Stomach Mucosa	stomach
13	chr6:11274200-11277400	Weak transcription	Fetal Heart	heart
14	chr6:11274400-11277600	Enhancers	HepG2	liver
15	chr6:11274400-11278600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr6:11274600-11279600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:11274800-11277800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr6:11274800-11278000	Weak transcription	Lung	lung
19	chr6:11274800-11286600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:11275000-11278800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:11275000-11279200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:11275200-11279000	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:11275200-11279000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr6:11275200-11280000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:11275400-11277400	Weak transcription	Small Intestine	intestine
26	chr6:11275800-11277800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr6:11275800-11279200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:11275800-11279200	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr6:11275800-11280000	Enhancers	Primary T cells fromperipheralblood	blood
30	chr6:11276000-11277400	Enhancers	GM12878-XiMat	blood
31	chr6:11276000-11277600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr6:11276000-11278800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr6:11276000-11280400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:11276000-11280600	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr6:11276200-11278800	Enhancers	Fetal Lung	lung
36	chr6:11276200-11295800	Weak transcription	Thymus	Thymus
37	chr6:11276400-11279000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:11276400-11279200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr6:11276400-11280400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:11276600-11278000	Enhancers	Colonic Mucosa	Colon
41	chr6:11276600-11278400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:11276600-11278600	Enhancers	H1 Cell Line	embryonic stem cell
43	chr6:11276600-11278600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:11276600-11278600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:11276600-11278600	Enhancers	Gastric	stomach
46	chr6:11276600-11278600	Enhancers	Pancreas	Pancrea
47	chr6:11276600-11278800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr6:11276600-11278800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:11276600-11279400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:11276600-11295600	Weak transcription	Primary hematopoietic stem cells	blood

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