Variant report

Variant	rs9468792
Chromosome Location	chr6:11285296-11285297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11230572..11232240-chr6:11283870..11286343,2	MCF-7	breast:
2	chr6:11227854..11232586-chr6:11280753..11285913,6	MCF-7	breast:
3	chr6:11281338..11286623-chr6:11287034..11292719,6	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9295935	1.00[YRI][hapmap]
rs9461616	0.93[AFR][1000 genomes]
rs9468849	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11274800-11286600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:11276200-11295800	Weak transcription	Thymus	Thymus
3	chr6:11276600-11295600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:11276800-11291600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:11277000-11292400	Weak transcription	Fetal Thymus	thymus
6	chr6:11277600-11296000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:11278000-11295400	Strong transcription	Primary B cells from cord blood	blood
8	chr6:11278600-11295000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:11278600-11299000	Weak transcription	Pancreas	Pancrea
10	chr6:11278800-11290600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:11279000-11292200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:11279000-11305000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:11279200-11292600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:11279600-11292800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:11279800-11292400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:11281200-11287800	Weak transcription	Stomach Mucosa	stomach
17	chr6:11281600-11295600	Weak transcription	Spleen	Spleen
18	chr6:11281800-11295000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:11282400-11290400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:11282800-11287000	Weak transcription	GM12878-XiMat	blood
21	chr6:11282800-11295800	Weak transcription	Lung	lung
22	chr6:11283800-11291000	Weak transcription	HepG2	liver
23	chr6:11284000-11290400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr6:11284200-11287400	Weak transcription	Fetal Intestine Large	intestine
25	chr6:11284200-11287800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:11284200-11288000	Weak transcription	Colonic Mucosa	Colon
27	chr6:11284400-11286600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr6:11284400-11287800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:11284400-11292400	Weak transcription	Small Intestine	intestine
30	chr6:11284600-11287400	Weak transcription	Primary T cells from cord blood	blood
31	chr6:11285000-11288800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:11285200-11285400	Enhancers	Primary T cells fromperipheralblood	blood
33	chr6:11285200-11285400	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr6:11285200-11285400	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links