Variant report

Variant	rs9468849
Chromosome Location	chr6:11318157-11318158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11230191..11234687-chr6:11312195..11319542,11	MCF-7	breast:
2	chr6:11316228..11320319-chr6:11338551..11345302,8	MCF-7	breast:
3	chr6:11316054..11319968-chr6:11321343..11323554,3	MCF-7	breast:
4	chr6:11317456..11320211-chr6:11352421..11354286,2	MCF-7	breast:
5	chr6:11316359..11321416-chr6:11341732..11346793,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9295935	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9468792	1.00[YRI][hapmap]
rs9468825	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv3439555	chr6:11317566-11322064	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11305800-11319400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:11306000-11319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11306400-11319400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:11306400-11326800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:11306600-11318200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:11306600-11319200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:11307000-11319400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:11310800-11319600	Weak transcription	Gastric	stomach
9	chr6:11310800-11323000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:11311000-11323800	Weak transcription	Fetal Thymus	thymus
11	chr6:11312200-11319600	Strong transcription	Primary T cells from cord blood	blood
12	chr6:11312800-11318200	Weak transcription	Spleen	Spleen
13	chr6:11313800-11318800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:11313800-11320200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:11314600-11319600	Weak transcription	Fetal Brain Male	brain
16	chr6:11315000-11318400	Strong transcription	Primary B cells from peripheral blood	blood
17	chr6:11315000-11322800	Strong transcription	Primary B cells from cord blood	blood
18	chr6:11315200-11320000	Enhancers	HMEC	breast
19	chr6:11315400-11319800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:11315400-11320000	Enhancers	Fetal Intestine Small	intestine
21	chr6:11315600-11319200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:11315800-11319800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:11315800-11320000	Enhancers	NH-A	brain
24	chr6:11315800-11320200	Enhancers	Fetal Intestine Large	intestine
25	chr6:11315800-11320200	Enhancers	Hela-S3	cervix
26	chr6:11316000-11321200	Weak transcription	Dnd41	blood
27	chr6:11316200-11329800	Weak transcription	Right Atrium	heart
28	chr6:11316400-11318200	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:11316400-11318200	Weak transcription	Small Intestine	intestine
30	chr6:11316400-11318600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
31	chr6:11316400-11320200	Enhancers	NHEK	skin
32	chr6:11316600-11318200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:11316800-11318200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr6:11316800-11318200	Weak transcription	Left Ventricle	heart
35	chr6:11316800-11320000	Enhancers	HUVEC	blood vessel
36	chr6:11317000-11318200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:11317000-11318200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:11317000-11318200	Weak transcription	HSMM	muscle
39	chr6:11317000-11319200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr6:11317000-11320200	Enhancers	NHDF-Ad	bronchial
41	chr6:11317200-11318200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:11317400-11318400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:11317400-11324600	Weak transcription	Thymus	Thymus
44	chr6:11317600-11318200	Enhancers	HepG2	liver
45	chr6:11317600-11319800	Enhancers	Stomach Mucosa	stomach
46	chr6:11317800-11318200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:11317800-11318200	Weak transcription	Fetal Kidney	kidney
48	chr6:11317800-11318200	Enhancers	Lung	lung
49	chr6:11317800-11318400	Genic enhancers	Primary monocytes fromperipheralblood	blood
50	chr6:11317800-11318400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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