Variant report

Variant	rs9461727
Chromosome Location	chr6:31831721-31831722
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:391)
CpG islands
(count:61)
Chromatin interactive
region (count:48)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:391 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr6:31831170-31832009	K562	blood:	n/a	n/a
2	POLR2A	chr6:31830116-31831878	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr6:31831700-31831850	GM06990	blood:	n/a	chr6:31831808-31831821 chr6:31831806-31831824 chr6:31831813-31831821
4	MYC	chr6:31831293-31831968	K562	blood:	n/a	n/a
5	EP300	chr6:31831311-31831738	H1-hESC	embryonic stem cell:	n/a	n/a
6	STAT3	chr6:31831483-31831967	MCF10A-Er-Src	breast:	n/a	chr6:31831814-31831825
7	HDAC2	chr6:31831255-31831945	HepG2	liver:	n/a	n/a
8	CTCF	chr6:31831640-31831790	NHDF-neo	bronchial:	n/a	n/a
9	SP1	chr6:31831185-31831948	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr6:31831325-31832002	HUVEC	blood vessel:	n/a	n/a
11	SP1	chr6:31831220-31831886	HepG2	liver:	n/a	n/a
12	TFAP2C	chr6:31831318-31831818	Hela-S3	cervix:	n/a	n/a
13	MAFK	chr6:31831355-31831842	K562	blood:	n/a	n/a
14	RAD21	chr6:31831262-31831962	H1-hESC	embryonic stem cell:	n/a	chr6:31831804-31831823
15	CTCF	chr6:31831660-31831810	GM12878	blood:	n/a	n/a
16	JUND	chr6:31831495-31831748	HepG2	liver:	n/a	n/a
17	YY1	chr6:31831671-31831897	K562	blood:	n/a	n/a
18	CTCF	chr6:31831720-31831870	GM12865	blood:	n/a	chr6:31831808-31831821 chr6:31831806-31831824 chr6:31831813-31831821
19	POLR2A	chr6:31831376-31831766	GM12892	blood:	n/a	n/a
20	POLR2A	chr6:31831351-31831800	HCT-116	colon:	n/a	n/a
21	YY1	chr6:31830997-31832002	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr6:31831680-31831830	HL-60	blood:	n/a	chr6:31831808-31831821 chr6:31831806-31831824 chr6:31831813-31831821
23	CTCF	chr6:31831680-31831830	GM06990	blood:	n/a	chr6:31831808-31831821 chr6:31831806-31831824 chr6:31831813-31831821
24	SP1	chr6:31831127-31831966	A549	lung:	n/a	n/a
25	ZNF143	chr6:31831553-31831876	GM12878	blood:	n/a	n/a
26	JUND	chr6:31831355-31831807	H1-hESC	embryonic stem cell:	n/a	n/a
27	SP1	chr6:31831301-31831893	K562	blood:	n/a	n/a
28	CTCF	chr6:31831625-31831876	T-47D	breast:	n/a	chr6:31831808-31831821 chr6:31831806-31831824 chr6:31831813-31831821
29	CEBPB	chr6:31831390-31831837	A549	lung:	n/a	n/a
30	CTCF	chr6:31831680-31831830	HEK293	kidney:	n/a	chr6:31831808-31831821 chr6:31831806-31831824 chr6:31831813-31831821
31	GATA1	chr6:31830424-31832058	PBDE	blood:	n/a	chr6:31830604-31830611 chr6:31830955-31830964
32	YY1	chr6:31831158-31831784	HepG2	liver:	n/a	n/a
33	EP300	chr6:31831328-31831810	T-47D	breast:	n/a	n/a
34	MYC	chr6:31831270-31831930	K562	blood:	n/a	n/a
35	CTCF	chr6:31831720-31831870	SK-N-SH_RA	brain:	n/a	chr6:31831808-31831821 chr6:31831806-31831824 chr6:31831813-31831821
36	MBD4	chr6:31831386-31831903	HepG2	liver:	n/a	n/a
37	SIN3AK20	chr6:31831199-31831983	SK-N-SH	brain:	n/a	n/a
38	CREB1	chr6:31830090-31831928	K562	blood:	n/a	chr6:31830879-31830892
39	ZNF217	chr6:31831305-31831840	MCF-7	breast:	n/a	n/a
40	RAD21	chr6:31831255-31831972	ECC-1	luminal epithelium:	n/a	chr6:31831804-31831823
41	RAD21	chr6:31831614-31831899	GM12878	blood:	n/a	chr6:31831804-31831823
42	MXI1	chr6:31830334-31831918	GM12878	blood:	n/a	chr6:31830718-31830727
43	ELF1	chr6:31831181-31831941	K562	blood:	n/a	n/a
44	CTCF	chr6:31831325-31832118	K562	blood:	n/a	chr6:31831808-31831821 chr6:31831806-31831824 chr6:31831813-31831821
45	MXI1	chr6:31831311-31831858	K562	blood:	n/a	n/a
46	IRF1	chr6:31831324-31831851	K562	blood:	n/a	n/a
47	CTCF	chr6:31831720-31831870	HRE	kidney:	n/a	chr6:31831808-31831821 chr6:31831806-31831824 chr6:31831813-31831821
48	POLR2A	chr6:31831383-31831865	HepG2	liver:	n/a	n/a
49	RCOR1	chr6:31831374-31831757	HepG2	liver:	n/a	n/a
50	HDAC2	chr6:31831202-31831844	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31831681-31831731	HCT-116	colon:	n/a
2	chr6:31831681-31831731	MCF10A-Er-Src	breast:	n/a
3	chr6:31831681-31831731	AG10803	skin:	n/a
4	chr6:31831681-31831731	Jurkat	blood:	n/a
5	chr6:31831681-31831731	ECC-1	luminal epithelium:	n/a
6	chr6:31831681-31831731	BE2_C	brain:	n/a
7	chr6:31831681-31831731	MCF-7	breast:	n/a
8	chr6:31831681-31831731	NT2-D1	testis:	n/a
9	chr6:31831681-31831731	HAEpiC	amniotic membrane:	n/a
10	chr6:31831681-31831731	HRE	kidney:	n/a
11	chr6:31831681-31831731	Hela-S3	cervix:	n/a
12	chr6:31831681-31831731	AG09319	gingival:	n/a
13	chr6:31831681-31831731	HUVEC	blood vessel:	n/a
14	chr6:31831681-31831731	PFSK-1	brain:	n/a
15	chr6:31831681-31831731	HEK293	kidney:	embryo
16	chr6:31831681-31831731	K562	blood:	n/a
17	chr6:31831681-31831731	Caco-2	colon:	n/a
18	chr6:31831681-31831731	NHBE	bronchial:	n/a
19	chr6:31831681-31831731	PrEC	prostate:	n/a
20	chr6:31831681-31831731	ovcar-3	ovarian:	n/a
21	chr6:31831681-31831731	HCM	heart:	n/a
22	chr6:31831681-31831731	AG04449	skin:	fetal
23	chr6:31831681-31831731	GM06990	blood:	n/a
24	chr6:31831681-31831731	AG09309	skin:	n/a
25	chr6:31831681-31831731	CMK	blood:	n/a
26	chr6:31831681-31831731	GM12878	blood:	n/a
27	chr6:31831681-31831731	SK-N-SH	brain:	n/a
28	chr6:31831681-31831731	HCF	heart:	n/a
29	chr6:31831681-31831731	HRCEpiC	kidney:	n/a
30	chr6:31831681-31831731	BJ	skin:	n/a
31	chr6:31831681-31831731	U87	brain:	n/a
32	chr6:31831681-31831731	HL-60	blood:	n/a
33	chr6:31831681-31831731	SKMC	muscle:	n/a
34	chr6:31831681-31831731	T-47D	breast:	n/a
35	chr6:31831681-31831731	LNCaP	prostate:	n/a
36	chr6:31831681-31831731	Hepatocyte	liver:	n/a
37	chr6:31831681-31831731	SK-N-SH_RA	brain:	n/a
38	chr6:31831681-31831731	HPAEpiC	pulmonary alveolar:	n/a
39	chr6:31831681-31831731	AG04450	lung:	fetal
40	chr6:31831681-31831731	SAEC	small airway:	n/a
41	chr6:31831681-31831731	GM12892	blood:	n/a
42	chr6:31831681-31831731	AoSMC	blood vessel:	n/a
43	chr6:31831681-31831731	RPTEC	kidney:	n/a
44	chr6:31831681-31831731	IMR90	lung:	fetal
45	chr6:31831681-31831731	HMEC	breast:	n/a
46	chr6:31831681-31831731	A549	lung:	n/a
47	chr6:31831681-31831731	HepG2	liver:	n/a
48	chr6:31831681-31831731	HEEpiC	esophagus:	n/a
49	chr6:31831681-31831731	NH-A	brain:	n/a
50	chr6:31831681-31831731	HIPEpiC	eye:	n/a

(count:48 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31761047..31764270-chr6:31827785..31831725,4	MCF-7	breast:
2	chr6:31830912..31833686-chr6:32013315..32015593,2	K562	blood:
3	chr6:31514420..31518271-chr6:31830053..31832008,3	K562	blood:
4	chr6:31743326..31746438-chr6:31828635..31833007,4	K562	blood:
5	chr6:31745070..31746845-chr6:31830028..31832915,2	MCF-7	breast:
6	chr6:31670174..31672313-chr6:31830988..31833810,3	K562	blood:
7	chr6:31830673..31832900-chr6:31938643..31940364,3	MCF-7	breast:
8	chr6:31830409..31832412-chr6:32014093..32016041,2	K562	blood:
9	chr6:31509002..31510673-chr6:31830602..31832330,2	K562	blood:
10	chr6:31761979..31764717-chr6:31829414..31832230,4	MCF-7	breast:
11	chr6:31800806..31810142-chr6:31827604..31833040,24	MCF-7	breast:
12	chr6:31750326..31751829-chr6:31829443..31831754,2	MCF-7	breast:
13	chr6:31781780..31785433-chr6:31828310..31832689,5	K562	blood:
14	chr6:31772422..31776496-chr6:31829254..31834757,6	K562	blood:
15	chr6:31828023..31833065-chr6:31863439..31869544,9	K562	blood:
16	chr6:31630209..31635577-chr6:31828786..31834874,28	K562	blood:
17	chr6:31831381..31833026-chr6:31853931..31855819,2	K562	blood:
18	chr6:31830083..31833987-chr6:31862759..31865610,4	MCF-7	breast:
19	chr6:31800580..31812447-chr6:31823435..31837480,47	K562	blood:
20	chr6:31801090..31813654-chr6:31824519..31834411,41	MCF-7	breast:
21	chr6:31794817..31797801-chr6:31829779..31831981,3	K562	blood:
22	chr6:31830894..31832674-chr6:31912375..31914374,2	MCF-7	breast:
23	chr6:31697145..31697789-chr6:31831310..31832181,3	K562	blood:
24	chr6:31630694..31635339-chr6:31828920..31834068,22	K562	blood:
25	chr6:31617566..31630444-chr6:31823885..31836000,84	K562	blood:
26	chr6:31829731..31832430-chr6:31863949..31866099,3	K562	blood:
27	chr6:31737530..31738235-chr6:31831315..31832267,3	K562	blood:
28	chr6:31781780..31785433-chr6:31829263..31832689,6	K562	blood:
29	chr6:31830500..31832979-chr6:31939876..31941891,3	K562	blood:
30	chr6:31706755..31708433-chr6:31830637..31832576,2	K562	blood:
31	chr6:31694918..31699964-chr6:31826467..31832957,9	K562	blood:
32	chr6:31831274..31833961-chr6:31853684..31856241,2	K562	blood:
33	chr6:31763390..31764233-chr6:31831287..31832195,2	MCF-7	breast:
34	chr6:31828958..31833712-chr6:31836982..31839801,4	MCF-7	breast:
35	chr6:31729872..31732091-chr6:31831679..31833339,2	K562	blood:
36	chr6:31711834..31714451-chr6:31829809..31833042,3	K562	blood:
37	chr6:31800755..31815108-chr6:31823340..31833266,54	K562	blood:
38	chr6:31793612..31800139-chr6:31830250..31833240,9	K562	blood:
39	chr6:31513172..31514702-chr6:31830028..31832398,2	MCF-7	breast:
40	chr6:31586339..31592286-chr6:31830032..31833457,6	K562	blood:
41	chr6:31701938..31704638-chr6:31828885..31832061,3	K562	blood:
42	chr6:31617566..31622844-chr6:31826455..31835211,65	K562	blood:
43	chr6:31630330..31634433-chr6:31829449..31833019,5	MCF-7	breast:
44	chr6:31830490..31833199-chr6:31923802..31927860,4	MCF-7	breast:
45	chr6:31697087..31699964-chr6:31831308..31832957,3	K562	blood:
46	chr6:31694971..31696688-chr6:31829211..31832001,2	MCF-7	breast:
47	chr6:31780296..31786175-chr6:31828333..31833086,7	MCF-7	breast:
48	chr6:31626270..31630199-chr6:31829030..31832230,7	K562	blood:

No data

Variant related genes	Relation type
NEU1	TF binding region
NEU1	CpG island
ENSG00000204498	Chromatin interaction
ENSG00000221267	Chromatin interaction
ENSG00000204396	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000204387	Chromatin interaction
ENSG00000227198	Chromatin interaction
ENSG00000204469	Chromatin interaction
ENSG00000204410	Chromatin interaction
ENSG00000254870	Chromatin interaction
ENSG00000204439	Chromatin interaction
ENSG00000204371	Chromatin interaction
ENSG00000201823	Chromatin interaction
ENSG00000255152	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000204389	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000204427	Chromatin interaction
ENSG00000228727	Chromatin interaction
ENSG00000213722	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000243649	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000200816	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000168477	Chromatin interaction
ENSG00000201754	Chromatin interaction
ENSG00000201207	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000204392	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000204388	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000201555	Chromatin interaction
ENSG00000213760	Chromatin interaction
ENSG00000204356	Chromatin interaction
ENSG00000204351	Chromatin interaction
ENSG00000166278	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28589703	0.90[ASN][1000 genomes]
rs56280220	0.82[ASN][1000 genomes]
rs9296002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469041	1.00[EUR][1000 genomes]
rs9469043	1.00[EUR][1000 genomes]
rs9469057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501157	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
2	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
3	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
5	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
7	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
9	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
10	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
11	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
12	nsv884428	chr6:31728102-31870326	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
13	nsv884429	chr6:31730356-31837066	Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
14	nsv462872	chr6:31778272-31864304	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
15	nsv601945	chr6:31778272-31864304	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
16	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
17	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
18	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
19	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
20	nsv462874	chr6:31794592-31864304	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
21	nsv601959	chr6:31794592-31864304	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
22	nsv884472	chr6:31813898-31870856	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
23	nsv508399	chr6:31829474-31902423	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31829200-31832000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:31829200-31832400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:31829400-31832200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:31829400-31832400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:31829600-31832200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:31829600-31832200	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:31829600-31832200	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:31829600-31832200	Active TSS	HSMM	muscle
9	chr6:31829600-31832200	Active TSS	HSMMtube	muscle
10	chr6:31829600-31832200	Active TSS	NHDF-Ad	bronchial
11	chr6:31829600-31832400	Active TSS	H9 Cell Line	embryonic stem cell
12	chr6:31829800-31831800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr6:31829800-31832200	Active TSS	Fetal Kidney	kidney
14	chr6:31829800-31832400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:31829800-31832400	Active TSS	A549	lung
16	chr6:31830000-31832000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:31830000-31832000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:31830000-31832000	Active TSS	Ovary	ovary
19	chr6:31830000-31832000	Active TSS	Right Atrium	heart
20	chr6:31830000-31832200	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr6:31830000-31832200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:31830000-31832200	Active TSS	Right Ventricle	heart
23	chr6:31830000-31832400	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr6:31830000-31832400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:31830000-31832400	Bivalent/Poised TSS	HepG2	liver
26	chr6:31830200-31831800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:31830200-31831800	Active TSS	Spleen	Spleen
28	chr6:31830200-31832000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:31830200-31832000	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr6:31830200-31832000	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr6:31830200-31832000	Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr6:31830200-31832000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:31830200-31832000	Active TSS	Brain Cingulate Gyrus	brain
34	chr6:31830200-31832000	Active TSS	Psoas Muscle	Psoas
35	chr6:31830200-31832000	Active TSS	Rectal Smooth Muscle	rectum
36	chr6:31830200-31832200	Active TSS	H1 Cell Line	embryonic stem cell
37	chr6:31830200-31832200	Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr6:31830200-31832200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:31830200-31832200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:31830200-31832200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:31830200-31832200	Active TSS	Brain Germinal Matrix	brain
42	chr6:31830200-31832200	Active TSS	Brain Substantia Nigra	brain
43	chr6:31830200-31832200	Active TSS	Colon Smooth Muscle	Colon
44	chr6:31830200-31832200	Active TSS	Left Ventricle	heart
45	chr6:31830200-31832200	Active TSS	GM12878-XiMat	blood
46	chr6:31830200-31832400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:31830200-31832400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:31830200-31832400	Active TSS	Brain Angular Gyrus	brain
49	chr6:31830400-31832000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:31830400-31832000	Active TSS	Fetal Brain Female	brain

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