Variant report

Variant	rs56280220
Chromosome Location	chr6:31797422-31797423
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:49)
CpG islands
(count:122)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:49 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr6:31795345-31797484	PANC-1	pancreas:	n/a	n/a
2	FOSL2	chr6:31796983-31797482	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:31794157-31797592	GM12892	blood:	n/a	n/a
4	PAX5	chr6:31796432-31797595	GM12878	blood:	n/a	n/a
5	POLR2A	chr6:31794277-31797933	K562	blood:	n/a	n/a
6	NR2F2	chr6:31794226-31797982	K562	blood:	n/a	n/a
7	MYC	chr6:31797114-31797489	MCF-7	breast:	n/a	n/a
8	POLR2A	chr6:31794161-31797583	GM12878	blood:	n/a	n/a
9	POLR2A	chr6:31794281-31797645	GM12892	blood:	n/a	n/a
10	POLR2A	chr6:31795056-31797587	MCF-7	breast:	n/a	n/a
11	POLR2A	chr6:31794982-31797616	MCF-7	breast:	n/a	n/a
12	MYC	chr6:31797407-31797477	K562	blood:	n/a	n/a
13	EBF1	chr6:31797390-31797722	GM12878	blood:	n/a	chr6:31797603-31797614
14	TEAD4	chr6:31797318-31800333	K562	blood:	n/a	n/a
15	TAF1	chr6:31794988-31797543	HepG2	liver:	n/a	n/a
16	ZBTB33	chr6:31795382-31797701	K562	blood:	n/a	n/a
17	SIN3AK20	chr6:31797218-31797424	A549	lung:	n/a	n/a
18	POLR2A	chr6:31794415-31797748	HepG2	liver:	n/a	n/a
19	POLR2A	chr6:31794388-31797702	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr6:31797212-31797474	A549	lung:	n/a	n/a
21	HEY1	chr6:31794370-31797829	K562	blood:	n/a	n/a
22	SP1	chr6:31797174-31797446	GM12878	blood:	n/a	n/a
23	MYC	chr6:31796774-31797481	MCF-7	breast:	n/a	n/a
24	NR2F2	chr6:31794048-31799998	K562	blood:	n/a	n/a
25	PML	chr6:31797318-31800395	K562	blood:	n/a	n/a
26	EBF1	chr6:31797420-31797786	GM12878	blood:	n/a	chr6:31797603-31797614
27	POLR2A	chr6:31794932-31797697	GM12878	blood:	n/a	n/a
28	POLR2A	chr6:31794453-31797629	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr6:31794192-31797772	GM12878	blood:	n/a	n/a
30	TRIM28	chr6:31796275-31797504	K562	blood:	n/a	n/a
31	PAX5	chr6:31797045-31797615	GM12878	blood:	n/a	n/a
32	CTCF	chr6:31797340-31797490	SK-N-SH_RA	brain:	n/a	n/a
33	POLR2A	chr6:31794553-31797632	GM12878	blood:	n/a	n/a
34	POLR2A	chr6:31794381-31797662	Hela-S3	cervix:	n/a	n/a
35	SIN3AK20	chr6:31794935-31797578	HepG2	liver:	n/a	n/a
36	MAX	chr6:31797333-31797508	K562	blood:	n/a	n/a
37	MYBL2	chr6:31797116-31798024	HepG2	liver:	n/a	n/a
38	POLR2A	chr6:31796720-31797587	ProgFib	skin:	n/a	n/a
39	JUND	chr6:31795116-31797633	HepG2	liver:	n/a	chr6:31795359-31795368 chr6:31795381-31795390
40	POLR2A	chr6:31796542-31797586	MCF-7	breast:	n/a	n/a
41	CBX3	chr6:31794192-31798316	K562	blood:	n/a	chr6:31794873-31794884
42	POLR2A	chr6:31796991-31797599	SK-N-MC	brain:	n/a	n/a
43	HEY1	chr6:31797358-31797763	HepG2	liver:	n/a	n/a
44	HEY1	chr6:31794284-31797783	K562	blood:	n/a	n/a
45	MYC	chr6:31796881-31797446	MCF-7	breast:	n/a	n/a
46	TAF1	chr6:31794911-31797611	HepG2	liver:	n/a	n/a
47	POLR2A	chr6:31797173-31797556	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr6:31795254-31797535	A549	lung:	n/a	n/a
49	POU2F2	chr6:31796928-31797551	GM12878	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31797416-31797466	HEEpiC	esophagus:	n/a
2	chr6:31797421-31797471	BJ	skin:	n/a
3	chr6:31797421-31797471	HNPCEpiC	eye:	n/a
4	chr6:31797421-31797471	GM12878	blood:	n/a
5	chr6:31797421-31797471	Caco-2	colon:	n/a
6	chr6:31797421-31797471	HAEpiC	amniotic membrane:	n/a
7	chr6:31797421-31797471	ovcar-3	ovarian:	n/a
8	chr6:31797416-31797466	HAEpiC	amniotic membrane:	n/a
9	chr6:31797416-31797466	HNPCEpiC	eye:	n/a
10	chr6:31797416-31797466	HRCEpiC	kidney:	n/a
11	chr6:31797416-31797466	SK-N-SH_RA	brain:	n/a
12	chr6:31797421-31797471	AG09319	gingival:	n/a
13	chr6:31797421-31797471	HUVEC	blood vessel:	n/a
14	chr6:31797416-31797466	HRPEpiC	eye:	n/a
15	chr6:31797421-31797471	NT2-D1	testis:	n/a
16	chr6:31797421-31797471	GM19239	blood:	n/a
17	chr6:31797416-31797466	MCF10A-Er-Src	breast:	n/a
18	chr6:31797421-31797471	PrEC	prostate:	n/a
19	chr6:31797421-31797471	T-47D	breast:	n/a
20	chr6:31797416-31797466	AG09309	skin:	n/a
21	chr6:31797421-31797471	SK-N-SH_RA	brain:	n/a
22	chr6:31797416-31797466	AG04449	skin:	fetal
23	chr6:31797421-31797471	HRE	kidney:	n/a
24	chr6:31797421-31797471	GM12892	blood:	n/a
25	chr6:31797416-31797466	GM12892	blood:	n/a
26	chr6:31797421-31797471	CMK	blood:	n/a
27	chr6:31797416-31797466	SAEC	small airway:	n/a
28	chr6:31797421-31797471	HCM	heart:	n/a
29	chr6:31797416-31797466	Jurkat	blood:	n/a
30	chr6:31797416-31797466	ProgFib	skin:	n/a
31	chr6:31797421-31797471	PFSK-1	brain:	n/a
32	chr6:31797421-31797471	PANC-1	pancreas:	n/a
33	chr6:31797416-31797466	NB4	blood:	n/a
34	chr6:31797421-31797471	HIPEpiC	eye:	n/a
35	chr6:31797421-31797471	Hepatocyte	liver:	n/a
36	chr6:31797421-31797471	HPAEpiC	pulmonary alveolar:	n/a
37	chr6:31797421-31797471	SK-N-SH	brain:	n/a
38	chr6:31797421-31797471	SAEC	small airway:	n/a
39	chr6:31797416-31797466	NT2-D1	testis:	n/a
40	chr6:31797416-31797466	AoSMC	blood vessel:	n/a
41	chr6:31797416-31797466	GM12891	blood:	n/a
42	chr6:31797416-31797466	CMK	blood:	n/a
43	chr6:31797416-31797466	HUVEC	blood vessel:	n/a
44	chr6:31797421-31797471	AoSMC	blood vessel:	n/a
45	chr6:31797416-31797466	HCT-116	colon:	n/a
46	chr6:31797421-31797471	GM12891	blood:	n/a
47	chr6:31797421-31797471	AG04450	lung:	fetal
48	chr6:31797416-31797466	HRE	kidney:	n/a
49	chr6:31797416-31797466	Hepatocyte	liver:	n/a
50	chr6:31797416-31797466	A549	lung:	n/a

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31796727..31799560-chr6:31913553..31916544,2	MCF-7	breast:
2	chr6:31740405..31741321-chr6:31797365..31798460,3	MCF-7	breast:
3	chr6:31646374..31649912-chr6:31794618..31797680,6	MCF-7	breast:
4	chr6:31795326..31798240-chr6:31869248..31870828,2	K562	blood:
5	chr6:31737226..31750413-chr6:31786206..31805473,50	MCF-7	breast:
6	chr6:31508088..31512302-chr6:31792582..31797881,5	K562	blood:
7	chr6:31695389..31697980-chr6:31796145..31797742,2	MCF-7	breast:
8	chr6:31795475..31798260-chr6:31864062..31867064,3	K562	blood:
9	chr6:31793612..31800139-chr6:31830250..31833240,9	K562	blood:
10	chr16:89988437..89990274-chr6:31795215..31797917,2	MCF-7	breast:
11	chr6:31795636..31798245-chr6:31918876..31922534,3	MCF-7	breast:
12	chr6:31706679..31708956-chr6:31795250..31798080,2	MCF-7	breast:
13	chr6:31619174..31622035-chr6:31794476..31797735,3	MCF-7	breast:
14	chr6:31686048..31689889-chr6:31795401..31797897,4	MCF-7	breast:
15	chr6:31797405..31799206-chr6:31828382..31830105,2	K562	blood:
16	chr6:31795638..31797726-chr6:32161977..32163708,2	K562	blood:
17	chr6:31795540..31798054-chr6:31844082..31846588,3	K562	blood:
18	chr6:31794817..31797801-chr6:31829779..31831981,3	K562	blood:
19	chr6:31586894..31588593-chr6:31796465..31799455,2	MCF-7	breast:
20	chr6:31756951..31764627-chr6:31780500..31799197,32	MCF-7	breast:
21	chr15:50646997..50647926-chr6:31797241..31797843,2	Hela-S3	cervix:
22	chr6:31758502..31767561-chr6:31786193..31804196,52	MCF-7	breast:
23	chr6:31796169..31798718-chr6:31855458..31858224,2	MCF-7	breast:

No data

Variant related genes	Relation type
C6orf48	TF binding region
C6orf48	CpG island
ENSG00000204420	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000204410	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000255152	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000204371	Chromatin interaction
ENSG00000213722	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000204366	Chromatin interaction
ENSG00000213654	Chromatin interaction
ENSG00000204469	Chromatin interaction
ENSG00000201555	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000243649	Chromatin interaction
ENSG00000258947	Chromatin interaction
ENSG00000259006	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000204396	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000204428	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000204421	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000166278	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9461727	0.82[ASN][1000 genomes]
rs9469057	0.82[ASN][1000 genomes]
rs9469059	0.82[ASN][1000 genomes]
rs9469062	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
2	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
3	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
7	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
9	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
10	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
11	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
12	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
13	nsv884426	chr6:31728102-31800868	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
14	nsv884427	chr6:31728102-31802465	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
15	nsv884428	chr6:31728102-31870326	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
16	nsv884429	chr6:31730356-31837066	Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
17	nsv884430	chr6:31731881-31800631	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
18	nsv462872	chr6:31778272-31864304	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
19	nsv601945	chr6:31778272-31864304	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
20	nsv869989	chr6:31779203-31797657	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	114 gene(s)	inside rSNPs	diseases
21	nsv884450	chr6:31783527-31797769	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
22	nsv884451	chr6:31783527-31800631	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
23	esv2421830	chr6:31785228-31797422	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
24	nsv601947	chr6:31785228-31797422	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
25	nsv884454	chr6:31785228-31797422	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
26	nsv884455	chr6:31785228-31797422	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
27	nsv884456	chr6:31785228-31800631	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
28	nsv884457	chr6:31785228-31803130	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
29	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
30	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
31	nsv884460	chr6:31785453-31797422	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
32	nsv884461	chr6:31785453-31827045	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
33	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
34	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
35	nsv884462	chr6:31785792-31797422	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
36	nsv462874	chr6:31794592-31864304	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
37	nsv601959	chr6:31794592-31864304	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
38	esv3329350	chr6:31794973-31799171	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
39	nsv969380	chr6:31797103-31797836	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	29 gene(s)	inside rSNPs	diseases
40	nsv884463	chr6:31797422-31827045	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31795800-31797600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:31795800-31797600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:31795800-31798800	Weak transcription	Spleen	Spleen
4	chr6:31797200-31797600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:31797200-31797600	Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr6:31797200-31797600	Active TSS	Rectal Mucosa Donor 31	rectum
7	chr6:31797200-31797600	Active TSS	Dnd41	blood
8	chr6:31797200-31797600	Active TSS	K562	blood
9	chr6:31797200-31797800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:31797200-31798200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:31797200-31798200	Active TSS	Fetal Muscle Leg	muscle
12	chr6:31797200-31798400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:31797200-31798400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:31797200-31798400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
15	chr6:31797200-31798400	Active TSS	Fetal Muscle Trunk	muscle
16	chr6:31797200-31798400	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr6:31797200-31798600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:31797200-31798600	Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr6:31797200-31798600	Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr6:31797200-31798600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:31797200-31798600	Active TSS	Muscle Satellite Cultured Cells	--
22	chr6:31797200-31798600	Active TSS	Brain Anterior Caudate	brain
23	chr6:31797200-31798600	Active TSS	Colon Smooth Muscle	Colon
24	chr6:31797200-31798600	Active TSS	Fetal Lung	lung
25	chr6:31797200-31798600	Active TSS	Placenta	Placenta
26	chr6:31797200-31798600	Active TSS	Fetal Stomach	stomach
27	chr6:31797200-31798600	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr6:31797200-31798600	Active TSS	Right Atrium	heart
29	chr6:31797200-31798600	Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr6:31797200-31798600	Active TSS	Stomach Smooth Muscle	stomach
31	chr6:31797200-31798600	Active TSS	Hela-S3	cervix
32	chr6:31797200-31798600	Active TSS	NH-A	brain
33	chr6:31797200-31798600	Active TSS	NHDF-Ad	bronchial
34	chr6:31797200-31798800	Active TSS	H1 Cell Line	embryonic stem cell
35	chr6:31797200-31798800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:31797200-31798800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:31797200-31798800	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr6:31797200-31798800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:31797200-31798800	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr6:31797200-31798800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:31797200-31798800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:31797200-31798800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:31797200-31798800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:31797200-31798800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:31797200-31798800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:31797200-31798800	Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr6:31797200-31798800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:31797200-31798800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:31797200-31798800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:31797200-31798800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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