Variant report

Variant	rs9461864
Chromosome Location	chr6:33481469-33481470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33480361..33482958-chr6:33629089..33631311,2	K562	blood:
2	chr6:33479121..33484420-chr6:33487848..33490096,5	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 40 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs557559	1.00[CEU][hapmap]
rs9461865	0.84[AFR][1000 genomes]
rs9461866	0.84[AFR][1000 genomes]
rs9469443	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9469444	0.84[AFR][1000 genomes]
rs9469446	0.85[AFR][1000 genomes]
rs9469465	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3392894	chr6:33479074-33482772	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv528962	chr6:33480435-33485241	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:40)

SNP	Gene	Cis/trans	Tissue	Source
rs9461864	ABLIM1	trans	brain	seeQTL
rs9461864	TMEM51	trans	brain	seeQTL
rs9461864	SRGAP2	trans	brain	seeQTL
rs9461864	ZNF219	trans	brain	seeQTL
rs9461864	KCTD14	trans	brain	seeQTL
rs9461864	CRTAM	trans	brain	seeQTL
rs9461864	MAPKBP1	trans	brain	seeQTL
rs9461864	MPP3	trans	brain	seeQTL
rs9461864	ZIC2	trans	brain	seeQTL
rs9461864	SRRT	trans	brain	seeQTL
rs9461864	POLB	trans	brain	seeQTL
rs9461864	POLR1D	trans	brain	seeQTL
rs9461864	EOMES	trans	brain	seeQTL
rs9461864	PLCH2	trans	brain	seeQTL
rs9461864	MAB21L1	trans	brain	seeQTL
rs9461864	FAT2	trans	brain	seeQTL
rs9461864	STK10	trans	brain	seeQTL
rs9461864	KRT19	trans	brain	seeQTL
rs9461864	SLC1A6	trans	brain	seeQTL
rs9461864	LEMD2	cis	brain	seeQTL
rs9461864	CBLN1	trans	brain	seeQTL
rs9461864	GPRC5C	trans	brain	seeQTL
rs9461864	GRIN2C	trans	brain	seeQTL
rs9461864	PKD1	trans	brain	seeQTL
rs9461864	PAG1	trans	brain	seeQTL
rs9461864	CDH15	trans	brain	seeQTL
rs9461864	SEL1L3	trans	brain	seeQTL
rs9461864	NUBP1	trans	brain	seeQTL
rs9461864	QSOX2	trans	brain	seeQTL
rs9461864	KRT31	trans	brain	seeQTL
rs9461864	PLCB4	trans	brain	seeQTL
rs9461864	SMC1A	trans	brain	seeQTL
rs9461864	CLCNKA	trans	brain	seeQTL
rs9461864	HOMER3	trans	brain	seeQTL
rs9461864	NRIP2	trans	brain	seeQTL
rs9461864	FAM131C	trans	brain	seeQTL
rs9461864	FOXN3	trans	brain	seeQTL
rs9461864	SHROOM3	trans	brain	seeQTL
rs9461864	C16orf79	trans	brain	seeQTL
rs9461864	NYNRIN	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33480600-33484800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33481000-33488000	Weak transcription	Spleen	Spleen
3	chr6:33481400-33491200	Weak transcription	Right Atrium	heart

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