Variant report

Variant	rs9461883
Chromosome Location	chr6:33520292-33520293
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs5745601	1.00[YRI][hapmap]
rs9469484	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9469516	1.00[YRI][hapmap]
rs9469517	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763548	chr6:33496201-33524779	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33516000-33523800	Weak transcription	GM12878-XiMat	blood
2	chr6:33516600-33521800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:33516800-33537600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:33517800-33524800	Weak transcription	Esophagus	oesophagus
5	chr6:33518000-33520800	Weak transcription	NHEK	skin
6	chr6:33519800-33524800	Weak transcription	Hela-S3	cervix
7	chr6:33520000-33521000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:33520000-33521200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:33520200-33521200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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