Variant report

Variant	rs9461908
Chromosome Location	chr6:33736082-33736083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33728564..33732066-chr6:33733725..33737558,5	MCF-7	breast:
2	chr6:33712629..33714583-chr6:33734231..33736589,2	MCF-7	breast:
3	chr6:33734321..33736255-chr6:34120616..34122226,2	MCF-7	breast:
4	chr6:33733658..33736198-chr6:33737954..33739952,2	K562	blood:
5	chr6:33735900..33737654-chr6:33755240..33757929,2	MCF-7	breast:
6	chr6:33734962..33738267-chr6:33754517..33756807,3	K562	blood:
7	chr6:33736023..33736621-chr6:33995139..33996006,3	K562	blood:
8	chr6:33732354..33734796-chr6:33734914..33737120,3	K562	blood:
9	chr6:33717632..33719728-chr6:33734198..33737184,2	K562	blood:
10	chr6:33683155..33686367-chr6:33732476..33736646,4	MCF-7	breast:
11	chr6:33727358..33730164-chr6:33732846..33736236,4	K562	blood:
12	chr6:33715170..33717899-chr6:33734548..33736786,2	MCF-7	breast:
13	chr6:33733421..33736486-chr6:33736727..33739454,3	K562	blood:
14	chr6:33734585..33738916-chr6:33755602..33758855,4	MCF-7	breast:
15	chr6:33734392..33738843-chr6:33747253..33751824,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2395448	1.00[YRI][hapmap]
rs6941414	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv462898	chr6:33723383-33768897	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv602840	chr6:33723383-33768897	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9461908	HLA-DPB1	cis	multi-tissue	Pritchard

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33715200-33737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33723400-33736600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:33726400-33738200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:33729000-33736200	Weak transcription	HSMM	muscle
5	chr6:33730000-33738600	Weak transcription	A549	lung
6	chr6:33730200-33736400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:33730200-33737800	Weak transcription	Right Atrium	heart
8	chr6:33730200-33738200	Weak transcription	Colonic Mucosa	Colon
9	chr6:33730200-33738400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:33730600-33738600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:33730800-33736600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:33730800-33737600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:33730800-33738600	Weak transcription	Liver	Liver
14	chr6:33731400-33738400	Weak transcription	Spleen	Spleen
15	chr6:33731600-33738200	Weak transcription	Right Ventricle	heart
16	chr6:33732000-33736200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:33732600-33742400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:33733800-33736400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:33734800-33738200	Enhancers	HSMMtube	muscle
20	chr6:33735000-33739600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:33735200-33736200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:33735200-33736400	Enhancers	Fetal Muscle Trunk	muscle
23	chr6:33735200-33738200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:33735200-33740000	Enhancers	Fetal Lung	lung
25	chr6:33735400-33739600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:33735600-33736600	Weak transcription	Adipose Nuclei	Adipose
27	chr6:33735600-33737000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:33735800-33736400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:33735800-33737000	Enhancers	NHLF	lung
30	chr6:33735800-33738800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr6:33736000-33738400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:33736000-33739600	Enhancers	Colon Smooth Muscle	Colon

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