Variant report

Variant	rs9461919
Chromosome Location	chr6:33806289-33806290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33799065..33803974-chr6:33805952..33809817,6	MCF-7	breast:
2	chr6:33805713..33808013-chr6:33847998..33849613,2	K562	blood:
3	chr6:33804994..33807921-chr6:33844816..33847091,2	MCF-7	breast:
4	chr6:33756157..33758446-chr6:33806014..33808470,2	MCF-7	breast:
5	chr6:33801193..33803055-chr6:33805654..33807646,2	MCF-7	breast:
6	chr6:33795530..33798300-chr6:33803409..33806426,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9461920	0.84[AFR][1000 genomes]
rs9469611	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv885775	chr6:33788055-33828178	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032074	chr6:33795671-33835988	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33801400-33809400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:33804000-33809000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:33805000-33809200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:33805200-33808600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:33805400-33808200	Enhancers	Osteobl	bone
6	chr6:33805400-33809400	Enhancers	HMEC	breast
7	chr6:33805400-33809400	Enhancers	NHLF	lung
8	chr6:33805400-33833400	Weak transcription	Right Atrium	heart
9	chr6:33805600-33806400	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr6:33805600-33806600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:33805600-33806800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:33805600-33807000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:33805600-33807000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:33805600-33807000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr6:33805600-33807200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:33805600-33807200	Enhancers	HepG2	liver
17	chr6:33805600-33807400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:33805600-33807400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:33805600-33807400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:33805600-33808400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:33805600-33808600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:33805600-33808600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:33805600-33808600	Enhancers	Fetal Thymus	thymus
24	chr6:33805600-33808800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:33805600-33809000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:33805600-33809000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:33805600-33809000	Enhancers	Fetal Stomach	stomach
28	chr6:33805600-33809000	Enhancers	NH-A	brain
29	chr6:33805600-33809200	Enhancers	NHDF-Ad	bronchial
30	chr6:33805600-33809400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:33805600-33809400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:33805600-33809600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:33805600-33809600	Enhancers	Placenta	Placenta
34	chr6:33805600-33809800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:33805600-33811400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:33805800-33806400	Enhancers	HSMM	muscle
37	chr6:33805800-33806600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:33805800-33806600	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr6:33805800-33806600	Flanking Active TSS	NHEK	skin
40	chr6:33805800-33807000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr6:33805800-33807400	Enhancers	K562	blood
42	chr6:33805800-33807800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:33805800-33808400	Enhancers	Fetal Lung	lung
44	chr6:33805800-33808600	Enhancers	H1 Cell Line	embryonic stem cell
45	chr6:33805800-33808600	Enhancers	Fetal Muscle Leg	muscle
46	chr6:33805800-33808600	Enhancers	Placenta Amnion	Placenta Amnion
47	chr6:33805800-33808600	Enhancers	HSMMtube	muscle
48	chr6:33805800-33809200	Enhancers	Esophagus	oesophagus
49	chr6:33805800-33809200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr6:33806000-33806400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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