Variant report

Variant	rs9461920
Chromosome Location	chr6:33807029-33807030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33799065..33803974-chr6:33805952..33809817,6	MCF-7	breast:
2	chr6:33806579..33810585-chr6:33811997..33816952,7	K562	blood:
3	chr6:33805713..33808013-chr6:33847998..33849613,2	K562	blood:
4	chr6:33804994..33807921-chr6:33844816..33847091,2	MCF-7	breast:
5	chr6:33791904..33795612-chr6:33806607..33809462,3	K562	blood:
6	chr6:33756157..33758446-chr6:33806014..33808470,2	MCF-7	breast:
7	chr6:33754295..33756727-chr6:33806828..33808832,2	MCF-7	breast:
8	chr6:33801193..33803055-chr6:33805654..33807646,2	MCF-7	breast:
9	chr6:33795996..33798344-chr6:33806425..33808689,2	K562	blood:
10	chr6:33780937..33783076-chr6:33806668..33808410,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9461919	0.84[AFR][1000 genomes]
rs9469611	0.84[AFR][1000 genomes]
rs9469614	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv885775	chr6:33788055-33828178	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032074	chr6:33795671-33835988	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33801400-33809400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:33804000-33809000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:33805000-33809200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:33805200-33808600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:33805400-33808200	Enhancers	Osteobl	bone
6	chr6:33805400-33809400	Enhancers	HMEC	breast
7	chr6:33805400-33809400	Enhancers	NHLF	lung
8	chr6:33805400-33833400	Weak transcription	Right Atrium	heart
9	chr6:33805600-33807200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:33805600-33807200	Enhancers	HepG2	liver
11	chr6:33805600-33807400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:33805600-33807400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:33805600-33807400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:33805600-33808400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:33805600-33808600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:33805600-33808600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:33805600-33808600	Enhancers	Fetal Thymus	thymus
18	chr6:33805600-33808800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:33805600-33809000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:33805600-33809000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:33805600-33809000	Enhancers	Fetal Stomach	stomach
22	chr6:33805600-33809000	Enhancers	NH-A	brain
23	chr6:33805600-33809200	Enhancers	NHDF-Ad	bronchial
24	chr6:33805600-33809400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:33805600-33809400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:33805600-33809600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:33805600-33809600	Enhancers	Placenta	Placenta
28	chr6:33805600-33809800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:33805600-33811400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:33805800-33807400	Enhancers	K562	blood
31	chr6:33805800-33807800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:33805800-33808400	Enhancers	Fetal Lung	lung
33	chr6:33805800-33808600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr6:33805800-33808600	Enhancers	Fetal Muscle Leg	muscle
35	chr6:33805800-33808600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr6:33805800-33808600	Enhancers	HSMMtube	muscle
37	chr6:33805800-33809200	Enhancers	Esophagus	oesophagus
38	chr6:33805800-33809200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:33806000-33807400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:33806000-33807600	Enhancers	A549	lung
41	chr6:33806000-33808000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:33806000-33808600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:33806000-33808800	Enhancers	Fetal Kidney	kidney
44	chr6:33806200-33807600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:33806200-33807600	Weak transcription	Adipose Nuclei	Adipose
46	chr6:33806200-33807800	Enhancers	Fetal Brain Male	brain
47	chr6:33806200-33809200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:33806400-33807400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:33806400-33807400	Weak transcription	Ovary	ovary
50	chr6:33806400-33809000	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links