Variant report

Variant	rs9462148
Chromosome Location	chr6:35901115-35901116
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11967286	1.00[AMR][1000 genomes]
rs11968307	1.00[AMR][1000 genomes]
rs11969934	1.00[AMR][1000 genomes]
rs16882039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28763973	1.00[AMR][1000 genomes]
rs61763103	1.00[AMR][1000 genomes]
rs7752369	1.00[AMR][1000 genomes]
rs9296167	1.00[AMR][1000 genomes]
rs9296169	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462123	1.00[AMR][1000 genomes]
rs9462137	1.00[AMR][1000 genomes]
rs9462139	1.00[AMR][1000 genomes]
rs9462149	1.00[AMR][1000 genomes]
rs9470106	1.00[AMR][1000 genomes]
rs9470107	1.00[AMR][1000 genomes]
rs9470110	1.00[AMR][1000 genomes]
rs9470129	1.00[AMR][1000 genomes]
rs9470137	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35889800-35901600	Weak transcription	Psoas Muscle	Psoas
2	chr6:35890400-35930200	Weak transcription	Pancreas	Pancrea
3	chr6:35899400-35904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:35899600-35901600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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