Variant report

Variant	rs9462149
Chromosome Location	chr6:35933028-35933029
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11967286	1.00[AMR][1000 genomes]
rs11968307	1.00[AMR][1000 genomes]
rs11969934	1.00[AMR][1000 genomes]
rs16882039	1.00[AMR][1000 genomes]
rs28763973	1.00[AMR][1000 genomes]
rs61763103	1.00[AMR][1000 genomes]
rs7752369	1.00[AMR][1000 genomes]
rs9296167	1.00[AMR][1000 genomes]
rs9296169	1.00[AMR][1000 genomes]
rs9462123	1.00[AMR][1000 genomes]
rs9462137	1.00[AMR][1000 genomes]
rs9462139	1.00[AMR][1000 genomes]
rs9462148	1.00[AMR][1000 genomes]
rs9470106	1.00[AMR][1000 genomes]
rs9470107	1.00[AMR][1000 genomes]
rs9470110	1.00[AMR][1000 genomes]
rs9470129	1.00[AMR][1000 genomes]
rs9470137	1.00[AMR][1000 genomes]
rs9470181	1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35923200-35959600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:35930800-35934800	Weak transcription	Pancreas	Pancrea
3	chr6:35931200-35934800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:35931400-35934400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:35932000-35933800	Weak transcription	HepG2	liver
6	chr6:35932000-35935000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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