Variant report

Variant	rs9462227
Chromosome Location	chr6:36778223-36778224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36773345..36779007-chr6:36781700..36788311,6	K562	blood:
2	chr6:36769485..36774936-chr6:36775864..36780694,5	K562	blood:
3	chr6:36777747..36780393-chr6:36794218..36796370,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9470403	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36762600-36789600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:36768800-36778600	Weak transcription	Right Atrium	heart
3	chr6:36772800-36778400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:36773200-36778400	Weak transcription	Brain Anterior Caudate	brain
5	chr6:36773200-36778400	Weak transcription	HUVEC	blood vessel
6	chr6:36773200-36778600	Weak transcription	Fetal Brain Female	brain
7	chr6:36773400-36778400	Weak transcription	Right Ventricle	heart
8	chr6:36774000-36785200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:36774200-36788600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:36776600-36778400	Weak transcription	Fetal Stomach	stomach
11	chr6:36776800-36778800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:36777000-36797800	Weak transcription	Pancreas	Pancrea
13	chr6:36777200-36779200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:36777600-36778600	Enhancers	HMEC	breast
15	chr6:36777600-36778800	Enhancers	Ovary	ovary
16	chr6:36777800-36778400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:36777800-36778600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:36777800-36779000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:36777800-36779400	Enhancers	Fetal Muscle Leg	muscle
20	chr6:36778000-36779200	Enhancers	Fetal Heart	heart
21	chr6:36778000-36779200	Enhancers	Fetal Muscle Trunk	muscle
22	chr6:36778200-36778400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:36778200-36778400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:36778200-36778400	Bivalent/Poised TSS	HepG2	liver
25	chr6:36778200-36779800	Enhancers	Adipose Nuclei	Adipose

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