Variant report

Variant	rs9470403
Chromosome Location	chr6:36772351-36772352
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36769485..36774936-chr6:36775864..36780694,5	K562	blood:
2	chr6:36767816..36770525-chr6:36771116..36773895,3	K562	blood:
3	chr6:36770535..36772762-chr6:36802560..36804403,2	MCF-7	breast:
4	chr6:36770706..36772419-chr6:36775864..36777990,2	K562	blood:
5	chr6:36764697..36766707-chr6:36770916..36775341,3	K562	blood:
6	chr6:36764128..36766707-chr6:36770890..36775341,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9462222	0.81[AFR][1000 genomes]
rs9462227	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36762000-36772800	Weak transcription	Fetal Brain Female	brain
2	chr6:36762600-36773000	Weak transcription	Right Ventricle	heart
3	chr6:36762600-36789600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:36762800-36772600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:36762800-36772600	Weak transcription	HUVEC	blood vessel
6	chr6:36764400-36773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:36767800-36773000	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:36768800-36778600	Weak transcription	Right Atrium	heart
9	chr6:36769000-36772400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:36769000-36772600	Weak transcription	Brain Germinal Matrix	brain
11	chr6:36769200-36773000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:36769200-36773800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:36771600-36772400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:36771600-36773600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:36771800-36774400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:36772000-36773000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:36772000-36773400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:36772000-36773800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:36772000-36773800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:36772000-36773800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:36772000-36774000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:36772000-36774200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:36772200-36773200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:36772200-36774000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr6:36772200-36774200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:36772200-36774200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:36772200-36774600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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