Variant report

Variant	rs9464722
Chromosome Location	chr6:14824961-14824962
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14823252..14825585-chr6:14828791..14831420,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10080876	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9296955	0.96[AFR][1000 genomes]
rs9464724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9476667	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9476668	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14819400-14828400	Weak transcription	Colonic Mucosa	Colon
2	chr6:14820000-14825000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:14820800-14825400	Enhancers	NHDF-Ad	bronchial
4	chr6:14821200-14826400	Weak transcription	Stomach Mucosa	stomach
5	chr6:14822200-14827800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:14822400-14826600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:14822800-14826600	Enhancers	Adipose Nuclei	Adipose
8	chr6:14823200-14825800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:14823200-14826800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:14823200-14827400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:14823400-14825400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:14823400-14825400	Enhancers	Colon Smooth Muscle	Colon
13	chr6:14823400-14827200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:14823400-14827400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:14823800-14825400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:14823800-14825400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:14823800-14827400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:14824000-14825000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:14824000-14825000	Enhancers	Brain Hippocampus Middle	brain
20	chr6:14824000-14825000	Enhancers	Right Atrium	heart
21	chr6:14824000-14825000	Enhancers	Right Ventricle	heart
22	chr6:14824000-14825200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:14824000-14825200	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:14824000-14825200	Enhancers	Brain Germinal Matrix	brain
25	chr6:14824000-14825400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:14824000-14825400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:14824000-14825600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:14824000-14825600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:14824000-14825600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:14824000-14825600	Enhancers	Fetal Lung	lung
31	chr6:14824000-14825800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:14824000-14826400	Enhancers	Fetal Muscle Leg	muscle
33	chr6:14824000-14826600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:14824000-14826800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:14824000-14827200	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:14824200-14825000	Enhancers	Left Ventricle	heart
37	chr6:14824200-14825400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:14824200-14825400	Enhancers	Fetal Stomach	stomach
39	chr6:14824200-14825600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:14824200-14825600	Enhancers	Fetal Kidney	kidney
41	chr6:14824200-14825800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr6:14824200-14826200	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr6:14824200-14826400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:14824400-14825000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:14824400-14825000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:14824400-14825000	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr6:14824400-14825000	Enhancers	Muscle Satellite Cultured Cells	--
48	chr6:14824400-14825200	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr6:14824400-14825200	Enhancers	Dnd41	blood
50	chr6:14824400-14825400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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