Variant report

Variant	rs9467105
Chromosome Location	chr6:24302819-24302820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs33914824	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72830861	0.83[EUR][1000 genomes]
rs72830884	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72833009	0.93[EUR][1000 genomes]
rs72833012	0.93[EUR][1000 genomes]
rs9467106	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24297800-24308000	Weak transcription	Fetal Kidney	kidney
3	chr6:24298000-24303800	Strong transcription	HepG2	liver
4	chr6:24298000-24308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:24301800-24303200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:24302000-24303000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr6:24302000-24303200	Enhancers	A549	lung
8	chr6:24302000-24304000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:24302400-24307800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:24302600-24303000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:24302600-24307800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:24302600-24308000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:24302800-24303000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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