Variant report

Variant	rs9467263
Chromosome Location	chr6:24700915-24700916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24429196..24431660-chr6:24699102..24701042,2	MCF-7	breast:
2	chr6:24700062..24702859-chr6:24704909..24709163,3	MCF-7	breast:
3	chr6:24696748..24707740-chr6:24716503..24724189,24	MCF-7	breast:
4	chr6:24530783..24533712-chr6:24700418..24704307,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112308	Chromatin interaction
ENSG00000112294	Chromatin interaction
ENSG00000272402	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10085192	0.87[ASN][1000 genomes]
rs16889581	0.87[ASN][1000 genomes]
rs17243499	0.87[ASN][1000 genomes]
rs17243513	0.87[ASN][1000 genomes]
rs17249855	0.87[ASN][1000 genomes]
rs17249952	0.81[ASN][1000 genomes]
rs6907640	0.87[ASN][1000 genomes]
rs6911150	0.87[ASN][1000 genomes]
rs6920675	0.87[ASN][1000 genomes]
rs6922239	1.00[EUR][1000 genomes]
rs9295629	0.87[ASN][1000 genomes]
rs9461051	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467250	0.87[ASN][1000 genomes]
rs9467261	1.00[ASN][1000 genomes]
rs9467265	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467267	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3508002	chr6:24618580-24732946	Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv3508003	chr6:24618580-24732946	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24669000-24701200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:24669400-24701600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:24674600-24703400	Weak transcription	Aorta	Aorta
4	chr6:24674800-24702200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24674800-24702200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:24674800-24702600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:24676600-24702600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:24678200-24702600	Weak transcription	HSMMtube	muscle
9	chr6:24678800-24701200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:24678800-24701600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:24680000-24705400	Weak transcription	Colonic Mucosa	Colon
12	chr6:24680600-24702600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:24680800-24701600	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:24681200-24705600	Weak transcription	Ovary	ovary
15	chr6:24681400-24701800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:24682400-24703000	Weak transcription	Lung	lung
17	chr6:24682800-24701800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:24682800-24702200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:24682800-24702200	Weak transcription	Fetal Stomach	stomach
20	chr6:24683000-24701400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:24683000-24702200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:24684200-24701800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:24684600-24701200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:24684800-24705400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:24684800-24705600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:24684800-24709000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:24685800-24703600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:24686200-24703000	Weak transcription	HSMM	muscle
29	chr6:24686200-24703400	Weak transcription	Fetal Kidney	kidney
30	chr6:24687600-24701400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:24687600-24703000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:24687600-24703400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:24688000-24704000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:24688200-24701400	Weak transcription	Primary B cells from cord blood	blood
35	chr6:24690200-24701600	Weak transcription	HMEC	breast
36	chr6:24691000-24703200	Weak transcription	Spleen	Spleen
37	chr6:24691400-24701600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:24692400-24702000	Weak transcription	NHEK	skin
39	chr6:24692400-24702600	Weak transcription	Psoas Muscle	Psoas
40	chr6:24692600-24702400	Weak transcription	Right Ventricle	heart
41	chr6:24692800-24702200	Weak transcription	Left Ventricle	heart
42	chr6:24693200-24703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:24693400-24701200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:24693400-24702000	Weak transcription	Fetal Brain Female	brain
45	chr6:24693600-24702400	Weak transcription	Thymus	Thymus
46	chr6:24693600-24704000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:24693600-24705200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr6:24693800-24703000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:24695800-24702600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:24696000-24701400	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links