Variant report

Variant	rs9467267
Chromosome Location	chr6:24716221-24716222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24711892..24724164-chr6:24769415..24786834,81	K562	blood:
2	chr6:24715365..24725462-chr6:24770390..24783002,86	K562	blood:
3	chr6:24716219..24722234-chr6:24748111..24753033,8	K562	blood:
4	chr6:24714616..24717353-chr6:24764940..24766713,2	K562	blood:
5	chr6:24661385..24670379-chr6:24713871..24722680,32	K562	blood:
6	chr6:24660920..24672880-chr6:24713381..24723000,42	K562	blood:
7	chr6:24714787..24716886-chr6:24784386..24786404,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224164	Chromatin interaction
ENSG00000112312	Chromatin interaction
ENSG00000112304	Chromatin interaction
ENSG00000111802	Chromatin interaction
ENSG00000218806	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10085192	0.87[ASN][1000 genomes]
rs10946726	1.00[JPT][hapmap]
rs12393	1.00[GIH][hapmap]
rs16889581	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17243499	0.87[ASN][1000 genomes]
rs17243513	0.87[ASN][1000 genomes]
rs17249855	0.87[ASN][1000 genomes]
rs17249952	1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2493334	1.00[JPT][hapmap]
rs2754771	1.00[JPT][hapmap]
rs2817741	1.00[JPT][hapmap]
rs2817743	1.00[JPT][hapmap]
rs6907640	1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[ASN][1000 genomes]
rs6911150	0.87[ASN][1000 genomes]
rs6920675	1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[ASN][1000 genomes]
rs6922239	1.00[EUR][1000 genomes]
rs6934711	1.00[JPT][hapmap]
rs7743901	1.00[JPT][hapmap]
rs7763865	1.00[JPT][hapmap]
rs9295629	1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.87[ASN][1000 genomes]
rs9461051	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467250	1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[ASN][1000 genomes]
rs9467261	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9467263	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467265	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467266	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3508002	chr6:24618580-24732946	Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv3508003	chr6:24618580-24732946	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
4	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24698200-24716400	Strong transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:24698200-24717400	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:24698400-24717400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:24699000-24716600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:24699000-24717400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:24700000-24716800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:24701400-24716800	Strong transcription	Placenta	Placenta
8	chr6:24701600-24716600	Strong transcription	Fetal Muscle Trunk	muscle
9	chr6:24701600-24716600	Strong transcription	Fetal Muscle Leg	muscle
10	chr6:24701800-24716800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:24702200-24716400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:24702200-24716600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:24702800-24716400	Strong transcription	Fetal Lung	lung
14	chr6:24702800-24716600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:24703000-24717200	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr6:24703400-24716400	Strong transcription	Fetal Kidney	kidney
17	chr6:24703800-24718000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:24705000-24717400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:24705200-24716600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:24705400-24716400	Strong transcription	H9 Cell Line	embryonic stem cell
21	chr6:24705600-24716600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:24708600-24717000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:24708800-24719400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:24709200-24716600	Weak transcription	Aorta	Aorta
25	chr6:24709600-24719000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:24709800-24717600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:24710600-24716600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr6:24710800-24716800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:24711000-24716600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr6:24711000-24716600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:24711000-24716600	Strong transcription	Colonic Mucosa	Colon
32	chr6:24711000-24717000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
33	chr6:24712000-24717200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:24712200-24716600	Strong transcription	HSMMtube	muscle
35	chr6:24712400-24717800	Genic enhancers	Brain Substantia Nigra	brain
36	chr6:24712600-24717600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr6:24712800-24716600	Genic enhancers	Colon Smooth Muscle	Colon
38	chr6:24712800-24716600	Genic enhancers	HepG2	liver
39	chr6:24712800-24719600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
40	chr6:24713000-24716400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
41	chr6:24713000-24716800	Strong transcription	A549	lung
42	chr6:24713000-24717400	Genic enhancers	Primary B cells from cord blood	blood
43	chr6:24713200-24716600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:24713200-24717400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
45	chr6:24713400-24717000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:24713600-24717000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
47	chr6:24714200-24716400	Strong transcription	Fetal Stomach	stomach
48	chr6:24714200-24716600	Strong transcription	Primary hematopoietic stem cells	blood
49	chr6:24714200-24716600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:24714200-24716600	Genic enhancers	Small Intestine	intestine

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