Variant report

Variant	rs7763865
Chromosome Location	chr6:24585253-24585254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24583561..24585775-chr6:24695731..24698506,2	MCF-7	breast:
2	chr6:24582804..24586516-chr6:24694820..24697864,3	MCF-7	breast:
3	chr6:24524047..24526030-chr6:24583848..24585910,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10946726	1.00[JPT][hapmap]
rs16889581	1.00[JPT][hapmap]
rs17249952	1.00[JPT][hapmap]
rs2493334	1.00[JPT][hapmap]
rs2754771	1.00[JPT][hapmap]
rs2817741	1.00[JPT][hapmap]
rs2817743	1.00[JPT][hapmap]
rs6907640	1.00[JPT][hapmap]
rs6920675	1.00[JPT][hapmap]
rs6934711	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7743901	1.00[JPT][hapmap]
rs9295629	1.00[JPT][hapmap]
rs9461038	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9461051	1.00[JPT][hapmap]
rs9467250	1.00[JPT][hapmap]
rs9467261	1.00[JPT][hapmap]
rs9467265	1.00[JPT][hapmap]
rs9467266	1.00[JPT][hapmap]
rs9467267	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
2	chr6:24581800-24586000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:24583200-24585400	Enhancers	Fetal Heart	heart
4	chr6:24583200-24586800	Enhancers	Fetal Intestine Small	intestine
5	chr6:24583600-24587200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:24583800-24585800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:24583800-24601200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:24583800-24606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:24584000-24585600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:24584000-24587200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:24584200-24585800	Enhancers	Fetal Intestine Large	intestine
12	chr6:24584200-24586600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:24584200-24600200	Weak transcription	A549	lung
14	chr6:24584400-24585600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:24584400-24585600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:24584400-24585600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:24584400-24590400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:24584400-24601200	Weak transcription	Brain Angular Gyrus	brain
19	chr6:24584600-24588200	Weak transcription	Brain Anterior Caudate	brain
20	chr6:24584600-24588200	Weak transcription	Fetal Brain Female	brain
21	chr6:24585000-24585400	Enhancers	Duodenum Mucosa	Duodenum
22	chr6:24585000-24585800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:24585200-24586000	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr6:24585200-24588200	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links